Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0486 ATGTCAAAAATGTCTATTCCTACTGGTCCAGagatagaagagaagagagttACTTCGATTTGCTATGAAGATGATTTTGGTACTCAAAAGGAAGATAAATTCAAATCTGCTAAAGTTGAGATGGGTGAggtgaagaaagaaaatgggagATTGAAGATGATGTTAGAGCGAGTAGAGAAGGACTACCACTCCCTTCAACTCCGTTTCTTTGACATCCTTCACAAAGACGTTTCAAAGAAGGGTGTAGCTGATTCATCTACTTCCCATGATGAAACTGAAGAGCCTGAGCTTGTGTCACTTTGCCTTGGAAGGAGTCCAAAGGAGCCTAAGAAGGAAGCAAGAATTGGAGACTCTaacaaaccaaaagaaaaagatgggGGACCCAACCTAACTCTTGGATTAGACTCCAAACACCTGCTGTCAATGGAGGTTGTGTCCGATTCGAGTCCCATGAACAGCTCAGAAGAACCAAAGGAAGCGGAAGCAGAGGGAACATTGTCACCAAATCAATCAGCAAAAATGATGAATGTAAACGAGGACATGTCAGACCAAATGCCAGCCAAGAGAGCCAGGGTGTCTGTGAGAGCTAGATGTGATACTCCCACGATGAATGATGGGTGCCAGTGGAGGAAATATGGACAGAAGATAGCAAAGGGAAATCCATGTCCAAGGGCATACTATCGTTGCACAGTTGCACCAACATGCCCAGTCAGGAAGCagGTGCAAAGGTGTGCTGAGGACTTGTCCATCTTAATCACCACGTATGAAGGAACCCATAACCACCCACTTCCAGTTTCAGCCACAGCCATGGCTTCCACCACTTCTGCTGCTGCTTCCATGCTGTTGTCAGGTTCTTCAACATCTCAACCTGCAGGCCACAGTTCTGCACCTTTTAGAAATTCTCCCACCACACTACTCAATGGTCTGAGTTTCAGTCACCAGTTTGATGAATCAAGAGCCAAACAAGTCTTCTCACCACCAAACCTTGCCTCACCACATATGTTCCCAACAATCACTCTAGACCTgacttcttcagcttcttcctCCTCATCAACTCAATTCCATCATCGCTTAAATTCAAGCATGGCTTCAATTTCAAACCGAAAATTTTCTCCAGCTAATCTCAGCTTTTGTTCCCCAGAGAATAACTTCATACCATCCATTTGGGGTAAGGTGTTCCCTGATAATGGCACAACCACAACACCAATTAACAAAGTCCCCACAAGGCCAGTTACGCAGGCAAATCATTACCAAGAACATTTCTACCAACAATGCACAACGAACCAAACTCCGTCCAGAGAAGCTTTGGCAGAAACAATAACCAAAGCAATCAGCACAGACCCGAGTCTTCGTTCAGTAATAGCTGCTGCAGTTTCATCAATAGTGGGGCATGGATCAAAGTCATCAAACAGTGGGAACCAAGAGGGAGCAGAAAATGTTCTTGGTTCAGGGTTGAACCTAAAATTGGGGGAGCATCTTCAATTGGCTTCACCCAATCCCTTGAACCAAAATGGGAAAGGATGCTTAACAGGATACCTCAAAAATTTGTCCTCTACAAGTTCTGAGGCAGGAAACTTCATTCTTCTCCAACCACCActgccattttctttctccAAGAGTGGCGCAAATCAGATCAACAATTATGTTCCAGAAATGAACACGCATCATTag 1671 0.4177 MSKMSIPTGPEIEEKRVTSICYEDDFGTQKEDKFKSAKVEMGEVKKENGRLKMMLERVEKDYHSLQLRFFDILHKDVSKKGVADSSTSHDETEEPELVSLCLGRSPKEPKKEARIGDSNKPKEKDGGPNLTLGLDSKHLLSMEVVSDSSPMNSSEEPKEAEAEGTLSPNQSAKMMNVNEDMSDQMPAKRARVSVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPTCPVRKQVQRCAEDLSILITTYEGTHNHPLPVSATAMASTTSAAASMLLSGSSTSQPAGHSSAPFRNSPTTLLNGLSFSHQFDESRAKQVFSPPNLASPHMFPTITLDLTSSASSSSSTQFHHRLNSSMASISNRKFSPANLSFCSPENNFIPSIWGKVFPDNGTTTTPINKVPTRPVTQANHYQEHFYQQCTTNQTPSREALAETITKAISTDPSLRSVIAAAVSSIVGHGSKSSNSGNQEGAENVLGSGLNLKLGEHLQLASPNPLNQNGKGCLTGYLKNLSSTSSEAGNFILLQPPLPFSFSKSGANQINNYVPEMNTHH 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0486 556 MobiDBLite consensus disorder prediction 105 124 - -
Ssu3g0486 556 MobiDBLite consensus disorder prediction 82 172 - -
Ssu3g0486 556 Gene3D WRKY domain 188 265 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu3g0486 556 Coils Coil 41 61 - -
Ssu3g0486 556 MobiDBLite consensus disorder prediction 82 97 - -
Ssu3g0486 556 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 33 545 IPR044810 GO:0003700
Ssu3g0486 556 ProSiteProfiles WRKY domain profile. 198 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu3g0486 556 PANTHER WRKY TRANSCRIPTION FACTOR 72-RELATED 33 545 - -
Ssu3g0486 556 SUPERFAMILY WRKY DNA-binding domain 196 264 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu3g0486 556 Pfam WRKY DNA -binding domain 204 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu3g0486 556 SMART WRKY_cls 203 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0486 Ssu-Chr3 11597723 11600363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0486 41 463 WRKY Transcription Factor Family AT5G15130 44.273 3.29e-83 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu3g0486 WRKY 6.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0486 - - gmx:100792084 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0486 3 11597723 11600363 Ssu1g2144 1 61101181 61106086 ECH
Ssu3g0486 3 11597723 11600363 Ssu6g1285 6 20863593 20868078 ECH
Ssu3g0486 3 11597723 11600363 Ssu3g0486 3 11597723 11600363 ECH
Ssu3g0486 3 11597723 11600363 Ssu8g2330 8 60732831 60733673 ECH
Ssu2g1633 2 64931430 64933682 Ssu3g0486 3 11597723 11600363 ECH