Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0478 atggccCTAGGGGTCATGGTTTTCCCACAAGATCCATTCACTTGCAGTTGCAAAGACTACTTTTACTCGTCAGTAGGAGGAGGAAGCCACGATTATGgaatcaccaccaccaccaacaataaCATAGACCACACTCTACATGCAAATTGGGATTCATCTTCTCCTTCGGTGTTGCAAAATGTCAAAGAGCAATGGGATTCACACTCTTCCCCCGAAGCTTGCATCGTTGATCAATCCCTCCCTAGAGCTTTCCCTCCTCCTCCTTCCTCCACCGAAGCCACCACAAGTCATCGCAAACGTCGTCATACCAAGAGCAAGGAGGGGATTGAAAACCAAAGGATGACCCACATTGCAGTTGAGTGCAATTGA 369 0.439 MALGVMVFPQDPFTCSCKDYFYSSVGGGSHDYGITTTTNNNIDHTLHANWDSSSPSVLQNVKEQWDSHSSPEACIVDQSLPRAFPPPPSSTEATTSHRKRRHTKSKEGIENQRMTHIAVECN 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0478 122 MobiDBLite consensus disorder prediction 78 122 - -
Ssu3g0478 122 PANTHER MAX DIMERIZATION, MAD 1 122 - -
Ssu3g0478 122 PANTHER TRANSCRIPTION FACTOR BHLH94-LIKE 1 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0478 Ssu-Chr3 11295812 11296180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0478 1 122 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 36.029 1.45e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0478 - - gmx:100803240 171.785