Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0476 ATGAATGATATCACTATCACTATCACATCCTCTTATTCTACCATGGCCTTCCCACCTTCTCCCAGTTTCACGTTTCATACTCATGAAGAAGATCACGACCACATCCCTTCAAACTCTCTCAACGCCTTCCCCTCTTTGCCACCCCAAGGCGGTGCACCTTTCATATTGAAGCGGTCCATGTCGTTTTCAGGCATTGAGAACAAGTGCGTTGAAGTGAACGGAGACGATGAATTATCTGATGATGGGATCTTCCAGTGtggggagaagaagaagaggctGAATTTAGAACAGGTGAAGGCTCTTGAGAAGAGTTTTGAGTTGGGGAACAAGCTTGACCCAGAAAGGAAAGTGCAGTTAGCTAGGGCTTTGGGGTTGCAGCCAAGACAGATTGCCATATGGTTTCAGAATAGAAGGGCCAGATGGAAAACCAAGCAATTGGAGAAGGAATATGAAGCCCTCAAGAAGCAGTTTGAAGCAGTCAAGGCTGATAATGATGTTCTTAAGGTTCAGAATAAGAAACTACAGGCACAGTTACAAGCTGTAAAAAGTAGGGATTGGTGTGAAGCTGAAATGATGAGCCTCAAGAAAGAAACTGAGGGTTCATGGAGCAATGGAAGTGACAACAGCTCAGACATTAATTTGGATCTCTCAAGATCAACACTAGGTTTGAACAGTCCTATATCTTATCAGAACGGTAAAAGCCTACTACCCATTTCTTTAAAGCCCACCAGCCTAACCCAGATCCTCCAATATTCGTCAAAACCAGACCTTCAAGATGATGGCTTCTGCAACATGCTTCACAACATTGATGCGCAACAGAACTTTTGGCCATGGCCTGATCAACAGCACCACCATTTCCATTGA 864 0.4306 MNDITITITSSYSTMAFPPSPSFTFHTHEEDHDHIPSNSLNAFPSLPPQGGAPFILKRSMSFSGIENKCVEVNGDDELSDDGIFQCGEKKKRLNLEQVKALEKSFELGNKLDPERKVQLARALGLQPRQIAIWFQNRRARWKTKQLEKEYEALKKQFEAVKADNDVLKVQNKKLQAQLQAVKSRDWCEAEMMSLKKETEGSWSNGSDNSSDINLDLSRSTLGLNSPISYQNGKSLLPISLKPTSLTQILQYSSKPDLQDDGFCNMLHNIDAQQNFWPWPDQQHHHFH 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0476 287 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981|GO:0006355
Ssu3g0476 287 Pfam Homeodomain 89 142 IPR001356 GO:0003677
Ssu3g0476 287 SUPERFAMILY Homeodomain-like 85 146 IPR009057 -
Ssu3g0476 287 Pfam Homeobox associated leucine zipper 144 183 IPR003106 GO:0006355|GO:0043565
Ssu3g0476 287 PRINTS Lambda-repressor HTH signature 124 140 IPR000047 GO:0003677
Ssu3g0476 287 PRINTS Lambda-repressor HTH signature 115 124 IPR000047 GO:0003677
Ssu3g0476 287 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677
Ssu3g0476 287 SMART HOX_1 87 148 IPR001356 GO:0003677
Ssu3g0476 287 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 15 287 - -
Ssu3g0476 287 Coils Coil 136 184 - -
Ssu3g0476 287 CDD homeodomain 89 145 IPR001356 GO:0003677
Ssu3g0476 287 Gene3D - 87 151 - -
Ssu3g0476 287 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 15 287 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0476 Ssu-Chr3 11182776 11184971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0476 15 280 Homeobox Transcription Factor Family AT3G01220 47.080 1.49e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu3g0476 Homeodomain 6.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0476 K09338 - gmx:100797920 420.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0476 3 11182776 11184971 Ssu3g0476 3 11182776 11184971 ECH
Ssu8g2322 8 60587418 60589882 Ssu3g0476 3 11182776 11184971 PCT