Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0474 ATGTCTAGCCGAAGATCAAGGCAACATTCAAGCTCTACAAGGATCTCCGATGACCAAATTGTCGAGCTTGTTTCCAAATTGCGCCAACTTGTTCCTGAGATTCGCAATAGGCGATCTGACAAGGTTTCAGCGTCTAAGGTCCTACAAGAGACCTGCAACTACATCAGAAGCTTGCACAGAGAGGTGAGTGACTTGAGTGAGCGATTGTCTCAGTTGTTGACCACAATTGATGCTGATAGTGCTGAGGCTGGAATCATTAGGAGCCTACTTAATCAATAA 279 0.4516 MSSRRSRQHSSSTRISDDQIVELVSKLRQLVPEIRNRRSDKVSASKVLQETCNYIRSLHREVSDLSERLSQLLTTIDADSAEAGIIRSLLNQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0474 92 Coils Coil 55 75 - -
Ssu3g0474 92 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
Ssu3g0474 92 PANTHER TRANSCRIPTION REGULATOR 1 90 - -
Ssu3g0474 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
Ssu3g0474 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 8 77 IPR036638 GO:0046983
Ssu3g0474 92 CDD bHLH_AtPRE_like 15 75 - -
Ssu3g0474 92 Pfam Helix-loop-helix DNA-binding domain 19 59 IPR011598 GO:0046983
Ssu3g0474 92 Gene3D - 1 83 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0474 Ssu-Chr3 11087605 11088936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0474 12 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 71.250 5.53e-35 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu3g0474 HLH 3.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0474 - - gmx:100796852 162.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0474 3 11087605 11088936 Ssu1g2134 1 60841252 60842318 ECH
Ssu3g0474 3 11087605 11088936 Ssu3g0474 3 11087605 11088936 ECH
Ssu3g0474 3 11087605 11088936 Ssu8g2320 8 60496496 60498219 ECH
Ssu2g1621 2 64645582 64646557 Ssu3g0474 3 11087605 11088936 ECH
Ssu8g2320 8 60496496 60498219 Ssu3g0474 3 11087605 11088936 PCT