Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0471 ATGGGAAGACCACCTTGTTGTGACAAAGAAGGGGTCAAGAAAGGGCCATGGACTCCTGAAGAAGACATCATATTGGTGTCTTATATACAGGAACATGGTCCTGGGAATTGGAGGGCAGTTCCTACCAAGACAGGGTTGTCAAGGTGCAGTAAGAGTTGCAGACTTCGATGGACGAATTACCTGAGGCCAGGAATCAAACGGGGTAACTTCACAGAACAAGAGGAGAAAATGATAATCCATCTTCAAGATCTTTTAGGAAACAGATGGGCTGCAATAGCTTCATACCTTCCACAGAGAACAGACAATGACATAAAGAACTATTGGAACACCCATTTGAGAAAGAAGCTGAAGAAGTTGCAAACAGGTTGTGAAGGTAGCTTGGGAGAAGGGTTCCCAGCCTCAAGGCAAATTCCTAGAGGCCAGTGGGAAACAAGGCTCCAAACTGATATTCAAACGGCAAAGAGAGCTCTCAGTGAAGCTCTTTCACCAGAGAAGCCACGTTGTTTATCTGCATCAAACTCAAACCCCTCAGATAGTAGCAGCTCCTTCTCTTCCACCAGGCCAGCCCAATCTTTGTGCTATGCTTCAAGTGCTGAGAACATAGCTCGCATGCTGAAGGGTTGGATGAAAAACCCACCAAAGTCCTCTAGAACTAACTCATCTGTGACTCAGAACTCCTTCAACAACTTAGTTGCAGCAGGTGCTGACACTGCTTCTAGTGGAGCAGAGGGACCAAGCAGTGCTGAATTGTCTGAGAATTTTGAATCCTTGTTTGATTTTGATCAGTCCTTGGAGTCTTCAAACTCTGATCAGTTCTCTCAGTCCTTGTCTCCTGAGGCCACTGTTTTGCAAGGTGAAAGCAAGCCTGATATTGGTGCAGAAATGCCCTTCTCTTGCTTGAGAAATGGCTTCTTGATGAGGCTGGTTGTCAAGAGAAAGTTGGTTGTGCTGATGCCAAGTTTTTCTAAGTTGGTTCATCAATCTCGCTTTGGCCTTAGAGAGAAGTTTTTCAATCCTTTGGTGGTAGACGTGTATATGTTTCTATTAATTAACATGATTATTATCATACTGTATTAA 1077 0.442 MGRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPGNWRAVPTKTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLRKKLKKLQTGCEGSLGEGFPASRQIPRGQWETRLQTDIQTAKRALSEALSPEKPRCLSASNSNPSDSSSSFSSTRPAQSLCYASSAENIARMLKGWMKNPPKSSRTNSSVTQNSFNNLVAAGADTASSGAEGPSSAELSENFESLFDFDQSLESSNSDQFSQSLSPEATVLQGESKPDIGAEMPFSCLRNGFLMRLVVKRKLVVLMPSFSKLVHQSRFGLREKFFNPLVVDVYMFLLINMIIIILY 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0471 358 MobiDBLite consensus disorder prediction 167 187 - -
Ssu3g0471 358 Gene3D - 68 125 - -
Ssu3g0471 358 CDD SANT 69 112 IPR001005 -
Ssu3g0471 358 Gene3D - 13 66 - -
Ssu3g0471 358 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 307 - -
Ssu3g0471 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Ssu3g0471 358 CDD SANT 16 61 IPR001005 -
Ssu3g0471 358 SMART sant 66 114 IPR001005 -
Ssu3g0471 358 SMART sant 13 63 IPR001005 -
Ssu3g0471 358 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 307 - -
Ssu3g0471 358 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu3g0471 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Ssu3g0471 358 MobiDBLite consensus disorder prediction 157 187 - -
Ssu3g0471 358 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu3g0471 358 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Ssu3g0471 358 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu3g0471 358 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0471 Ssu-Chr3 10965842 10967257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0471 1 305 MYB Transcription Factor Family AT5G62470 50.291 1.84e-98 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu3g0471 Myb_DNA-binding 7.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0471 K09422 - gmx:778080 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2305 8 60253972 60255311 Ssu3g0471 3 10965842 10967257 PCT