Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0470 ATGAGGAAGTGTCAAGTGGTTTTGAGAAGAGAGGAGCCTCCAAGATGCTCAAACAATTCACCAATGAGGATTGTGAGGAATGTGATATATGGCGAGTGCCAAAAGAATCAAGCAGTTAATGTTGGAGGATTTGCTGTGGATGGTTGTAGGGAGTTCATGGCAAGTGGGGCAGAAGGAACAGCTGGAGCTCTGACTTGTGCTGCCTGTGGCTGCCACAAGAACTTTCACAAGAGGGAGGTGCAAACACAAATGGTTTGTGATTGCTCTTCTCACCCTACCACCAGTGGAGCTTGA 294 0.4762 MRKCQVVLRREEPPRCSNNSPMRIVRNVIYGECQKNQAVNVGGFAVDGCREFMASGAEGTAGALTCAACGCHKNFHKREVQTQMVCDCSSHPTTSGA 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0470 97 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 30 79 IPR006456 -
Ssu3g0470 97 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 94 - -
Ssu3g0470 97 Pfam ZF-HD protein dimerisation region 27 80 IPR006456 -
Ssu3g0470 97 PANTHER BNAA09G02420D PROTEIN 1 94 - -
Ssu3g0470 97 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 30 80 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0470 Ssu-Chr3 10936413 10936706 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0470 1 94 Zinc finger-homeobox gene family AT3G28917 64.286 2.26e-35 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Ssu3g0470 ZF-HD_dimer 7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0470 - - gra:105766244 137.502