Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0469 aTGTCCGCCGCCGTTAACCACCCCGCGGCGGTTGCCTACAAAGAATGCCTCAAAAACCACGCCGCGAACTTGGGCGGCCACGCTTTAGACGGCTGCGGCGAGTTCATGCCGTCGCCCACCGCCACGGCCGCCGACCCCAGCTCCATAAAATGCGCCGCGTGCGGCTGCCACCGGAACTTCCACCGCCGCGAGCCGGAGGAGCCGCCCCTGGCCTCCACCGCCACGCACGTGATCGAGTTCCAGccccaccaccgccaccaccctCTGCCGCCGTTCCAGGCCGCGACCCGCAGCCCCAATTCTGCGTCCCCGCCGCCGATCTCCTCGTCGTACTACCCATCCGCGCCGCACATGCTCCTCGCCCTCTCCGCCGGCCTGGCGGCGCCGCCCGAGAGCACCGCCGCACCCTCCGCCGCCCACACCCGGAAGCGCTTCCGCACCAAGTTCACGCAGGAGCAGAAAGAAAAGATGCAAAAGTTCGCAGAGAAAGTAGGGTGGAAGATGCAAAAAAAAGACGAAGACTTGGTGCAAGAGTTTTGCAACGAGGTTGGCGTCGATAGAAGCGTGCTCAAGGTTTGGATGCATAACAACAAAAACACTTTCgccaaaaaagataataataataataataataatgataataataataatactagtgatgatattaataatattaataataatggtaaTGGTGGTGAGAAGAGCTATGAAGACCCCAATAACaacaacgatggtggtggtggtgctgaAGATCGCGCTGAGGATCCGAGTCGTAATCATCACTATGGTGGGGCGAGCGTTGGTGCTAATgggtcttcttcttcttga 828 0.506 MSAAVNHPAAVAYKECLKNHAANLGGHALDGCGEFMPSPTATAADPSSIKCAACGCHRNFHRREPEEPPLASTATHVIEFQPHHRHHPLPPFQAATRSPNSASPPPISSSYYPSAPHMLLALSAGLAAPPESTAAPSAAHTRKRFRTKFTQEQKEKMQKFAEKVGWKMQKKDEDLVQEFCNEVGVDRSVLKVWMHNNKNTFAKKDNNNNNNNDNNNNTSDDINNINNNGNGGEKSYEDPNNNNDGGGGAEDRAEDPSRNHHYGGASVGANGSSSS 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0469 275 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 13 64 IPR006456 -
Ssu3g0469 275 Gene3D - 129 203 - -
Ssu3g0469 275 ProSiteProfiles 'Homeobox' domain profile. 140 204 IPR001356 GO:0003677
Ssu3g0469 275 MobiDBLite consensus disorder prediction 200 242 - -
Ssu3g0469 275 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 13 64 IPR006456 -
Ssu3g0469 275 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 8 227 - -
Ssu3g0469 275 Pfam ZF-HD protein dimerisation region 11 65 IPR006456 -
Ssu3g0469 275 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 142 199 IPR006455 -
Ssu3g0469 275 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 8 227 - -
Ssu3g0469 275 SUPERFAMILY Homeodomain-like 133 203 IPR009057 -
Ssu3g0469 275 MobiDBLite consensus disorder prediction 94 108 - -
Ssu3g0469 275 MobiDBLite consensus disorder prediction 200 275 - -
Ssu3g0469 275 MobiDBLite consensus disorder prediction 84 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0469 Ssu-Chr3 10876319 10877146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0469 4 201 ZF-HD Transcription Factor Family AT1G69600 53.271 5.80e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Ssu3g0469 ZF-HD_dimer 3.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0469 - - gmx:100789447 344.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2303 8 60163293 60164243 Ssu3g0469 3 10876319 10877146 PCT