Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0465 ATGGGAGATCACGTCACTGTCTCTCCTGAGAAATTTCTGGGAACTCCATGCCAAGGATCCTCAACCACTCAACACCACATTGCAATCCCCATTGAGGAATTGAGTGCATCATTTGCAGCTGCAAAAGAAGAAAAGCTTGTAACCGATGCCTATGTGGACAATGTCCAAAACCCTGAAGAGAAAGGTGAAGAAACTGAAGACAAGGGAGAATGCCGCTACTGTCACGAGGAGGACTTTGTTTCTAAACTGGAATCACCCTGCAATTGTAGTGGCAGCTTGAAGTATATTCACAGGAGCTGCATTGACAAATGGTACAATTCCAAAGGCTACATAATATTATGTGAGATTTGCATGAAGCCTTACAATCCAAATTATTACCCAGTTTCGGAAATTCTTTCTGATGATGATCACACAGAGATAAGGCAAGAATGGACTATTCCCCAAACAAACACTCGAATCCAATCACCTCTGGTGCTGGCAGAGCGTGCCACCAACAGAGTCATCGCATCAATGAATAAAGACTTCAGCTTGAGAAAACCCACCGGAGGCATGATACTTGGAATGGCACTCCTCATCTTTATCGCGGTGCTAGTTATAAAGGATGCCATTAACTGTGTGCCACCCAAGGAGGACACATTTTCTCGCTTTTTGTACTTTCTATCTGTGAGATGTAAATATTATGGTTAA 687 0.4309 MGDHVTVSPEKFLGTPCQGSSTTQHHIAIPIEELSASFAAAKEEKLVTDAYVDNVQNPEEKGEETEDKGECRYCHEEDFVSKLESPCNCSGSLKYIHRSCIDKWYNSKGYIILCEICMKPYNPNYYPVSEILSDDDHTEIRQEWTIPQTNTRIQSPLVLAERATNRVIASMNKDFSLRKPTGGMILGMALLIFIAVLVIKDAINCVPPKEDTFSRFLYFLSVRCKYYG 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0465 228 SUPERFAMILY RING/U-box 67 122 - -
Ssu3g0465 228 ProSiteProfiles Zinc finger RING-CH-type profile. 63 124 IPR011016 GO:0008270
Ssu3g0465 228 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 35 220 - -
Ssu3g0465 228 SMART ringv_2 70 118 IPR011016 GO:0008270
Ssu3g0465 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 127 IPR013083 -
Ssu3g0465 228 Pfam RING-variant domain 71 117 IPR011016 GO:0008270
Ssu3g0465 228 CDD RING_CH-C4HC3_MARCH 71 117 - -
Ssu3g0465 228 MobiDBLite consensus disorder prediction 1 22 - -
Ssu3g0465 228 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 35 220 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0465 Ssu-Chr3 10794121 10798143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0465 39 108 C3H Transcription Factor Family AT1G50440 33.333 4.00e-07 47.4