Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0464 ATGGAGGGGACCAACCAAAACACGTTTAGCTTCATCACTGACACGGTGGAGCCACCAAGTCCAAGCACCCCCGGGCCATCATCACCCCGTGGCTTCTTTGCAAGACTTGCACAAAGTTACCCTCCTGGTTTTCCCAGAAAGGTTTTTGCGGAGGTTATAGGGACATTTCTATTGGTATTTGTGGGAAGTGGTTCTGCGGGTCTTAGTACCATTGATCAAAGCAAGGTCTCAAAACTTGCAGCTTCACTTGCAGCAGGGTTCATAGTGACGGTGATGATTTACTCAATTGGGCACATCTCTGGGGCGCACATGAACCCTGCGGTTTCGCTTGCTCTTGCCGCCGTGAGGCATTTTCCGTGGCCCCAGCTCCCATTTTACATAGCAGCTCAACTCACTGGAGCCATTTCTGCTTCATATACATTGCGAGAGCTGTTAGAACCATCAAAGGAGATTGGGGCAACGTCACCTGCTGGATCACATATTCAAGCACTAATCATGGAAATGGTAACCACATTCACCATGGTGTTCATTACCATGGCTGTGGCCACTGACACAAACGCTACAAGAATGCTGTCAGGAGTAGCAGTAGGTTCTTCTGTTAGCATAGCAAGCATTGTTGCCGGACCAATATCAGGGGGATCAATGAACCCAGCAAGGACATTAGGTCCTGCAATTGCAACTTCATCCTACAAGGGACTTTGGGTATATTTTGTTGGACCGATTACAGGGGCACTTTTAGCAGCATGGTCTTACAATGTGATTAGGGACACGGAACATCCCGGTTTTCCATTTTCACTATCCTCCCTTTCATTCAAGTTACGCCAAAGCATTAGTGGAACTGAGAATAAAACCGGTCACCAATGCTTGGTGTGA 873 0.4788 MEGTNQNTFSFITDTVEPPSPSTPGPSSPRGFFARLAQSYPPGFPRKVFAEVIGTFLLVFVGSGSAGLSTIDQSKVSKLAASLAAGFIVTVMIYSIGHISGAHMNPAVSLALAAVRHFPWPQLPFYIAAQLTGAISASYTLRELLEPSKEIGATSPAGSHIQALIMEMVTTFTMVFITMAVATDTNATRMLSGVAVGSSVSIASIVAGPISGGSMNPARTLGPAIATSSYKGLWVYFVGPITGALLAAWSYNVIRDTEHPGFPFSLSSLSFKLRQSISGTENKTGHQCLV 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0464 290 PANTHER AQUAPORIN NIP2-1 39 276 IPR034294 -
Ssu3g0464 290 Pfam Major intrinsic protein 44 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g0464 290 PANTHER MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED 39 276 - -
Ssu3g0464 290 TIGRFAM MIP: MIP family channel proteins 50 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g0464 290 Gene3D Glycerol uptake facilitator protein. 34 260 IPR023271 -
Ssu3g0464 290 SUPERFAMILY Aquaporin-like 40 260 IPR023271 -
Ssu3g0464 290 PRINTS Major intrinsic protein family signature 122 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g0464 290 PRINTS Major intrinsic protein family signature 234 254 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g0464 290 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g0464 290 PRINTS Major intrinsic protein family signature 197 219 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g0464 290 PRINTS Major intrinsic protein family signature 46 65 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g0464 290 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g0464 290 CDD MIP 46 254 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g0464 290 ProSitePatterns MIP family signature. 103 111 IPR022357 -
Ssu3g0464 290 MobiDBLite consensus disorder prediction 1 28 - -
Ssu3g0464 290 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0464 Ssu-Chr3 10723008 10726742 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0464 46 260 Major Intrinsic Protein MIP AT5G37820 46.759 1.10e-63 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0464 K09874 - gmx:100788071 420.239