Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0448 ATGCTGAATTTATGTAGGAAAATGGCTCTTCTTGGATTTCTTCTGGGACTTTTCTACATGGTGTCACATGTGAAGGGGTATGGTGGGGGTTGGACCAATGCACATGCCACTTTCTATGGAGGAGGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGTTATGGAAATCTGTATAGCCAAGGTTATGGAACTGATACAACAGCACTAAGCACTGCACTGTTCAACAATGGCTTGAGCTGTGGTGCATGCTTTGAAATTAAATGTGTGAATGACCCACAATGGTGCCTTCCTGGCTCCATCATAGTCACTGCCACAAATTTCTGTCCACCTGGTGGTTGGTGTGACCCTCCCAACCACCACTTTGATCTGTCTCAACCTGTTTTCCAGCACATTGCTCAATATAGGGCTGGGATTGTGCCTGTAGTTTACCAAAGGGTGAGGTGCAGGAGAAAGGGTGGAATCAGGTTCACCATCAATGGCCACTCTTacttcaatttagtccttgtcaCCAATGTTGGAGGTGCTGGTGATGTGCATGCTGTGTCCATCAAAGGTTCAAGAACTAGATGGCGAGCCATGTCAAGAAACTGGGGGCAAAACTGGCAAAGCAATTCCTACTTGAATGGGCAGAGCCTTTCCTTTGTGGTCACCACCAGTAATGGACACAATGTAGCCTCATACAATGTTGCCCCAGCTAGTTGGTCCTTTGGACAAACCTACACTGGAAGGCAGTTCAACTACTAA 744 0.461 MLNLCRKMALLGFLLGLFYMVSHVKGYGGGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTDTTALSTALFNNGLSCGACFEIKCVNDPQWCLPGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVVYQRVRCRRKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVSIKGSRTRWRAMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHNVASYNVAPASWSFGQTYTGRQFNY 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0448 247 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 153 IPR007112 -
Ssu3g0448 247 Pfam Expansin C-terminal domain 154 231 IPR007117 -
Ssu3g0448 247 SMART dpbb_1 66 143 IPR007112 -
Ssu3g0448 247 PRINTS Expansin signature 199 220 IPR002963 GO:0009664
Ssu3g0448 247 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Ssu3g0448 247 PRINTS Expansin signature 152 164 IPR002963 GO:0009664
Ssu3g0448 247 PRINTS Expansin signature 228 244 IPR002963 GO:0009664
Ssu3g0448 247 PRINTS Expansin signature 128 141 IPR002963 GO:0009664
Ssu3g0448 247 PRINTS Expansin signature 164 185 IPR002963 GO:0009664
Ssu3g0448 247 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Ssu3g0448 247 PRINTS Expansin signature 111 128 IPR002963 GO:0009664
Ssu3g0448 247 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Ssu3g0448 247 Gene3D - 153 245 IPR036749 -
Ssu3g0448 247 SUPERFAMILY Barwin-like endoglucanases 30 171 IPR036908 -
Ssu3g0448 247 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 242 IPR007117 -
Ssu3g0448 247 Pfam Lytic transglycolase 66 143 IPR009009 -
Ssu3g0448 247 PANTHER EXPANSIN-A15 9 246 IPR002963 GO:0009664
Ssu3g0448 247 PANTHER EXPANSIN 9 246 - -
Ssu3g0448 247 SUPERFAMILY PHL pollen allergen 150 242 IPR036749 -
Ssu3g0448 247 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Ssu3g0448 247 PRINTS Expansin/Lol pI family signature 136 152 IPR007118 GO:0005576
Ssu3g0448 247 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Ssu3g0448 247 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Ssu3g0448 247 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Ssu3g0448 247 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576
Ssu3g0448 247 Gene3D - 19 149 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0448 Ssu-Chr3 10242972 10244079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0448 7 245 Expansin Gene Family AT2G03090 77.419 4.06e-139 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0448 K20628 - gmx:100791784 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0448 3 10242972 10244079 Ssu1g2098 1 59786414 59788616 ECH
Ssu3g0448 3 10242972 10244079 Ssu6g1250 6 20326958 20330194 ECH
Ssu3g0448 3 10242972 10244079 Ssu3g0448 3 10242972 10244079 ECH
Ssu3g0448 3 10242972 10244079 Ssu8g2293 8 59932052 59933496 ECH
Ssu2g1578 2 63511984 63514639 Ssu3g0448 3 10242972 10244079 ECH