Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0443 ATGGGATCAATGGAGAACGTTTCCAAACCAAGGAAGGAAAATCAGAAGTTTGAATTACCACCGGGTTTTAGATTTCACCCAACAGATGAAGAACTCATAAATCACTACCTCGCCAAGAAGGCTGTTGACAATTGTTTCTGTGCTGTGGCCATTGGTGAGGTTGATTTGAACAAGTGTGAGCCATGGGATTTGCCAGGGTTGGCTAAAATGGGTGAAACTGAGTGGTACTATTTCTGTGTGAGGGACAGAAAATACCCAACTGGTTTAAGGACTAATAGGGCCACTGATGCTGGTTACTGGAAGGCCACAGGCAAAGACAAGGAGATAATAATGGAAAATGCACTCATTGGGATGAAGAAAACCTTGGTCTTCTACAAGGGAAGAGCTCCAAAAGGTGAAAAGACAAGCTGGGTTATGCATGAATATAGGTTGGAAGGGAAGCATAATCAACCCAAACCTGGAATGAGTGAATGGGTTATTTGTAGGGTCTTTGAGAAGAGTCCTTGTGGAAAGAAAATGCATGTTCCAAAGTGTGGGAGGTTCAACAACTCCTTTGGAGAGGAACCATCATCACCTGCTTCTCTATTGCCTCCTTTGATGGAATCTTCTCCATACAACAGTGAAACAAGAACCACTGCTGGTGAGTTGTCTCAGGTGACATGCTTCTCTGACCCAAATCAAGTTGAGGATCAGAACATACATGATGACATTGTTGATAGCATGGAAACCCCTATTTTGGACTTTTCAACCTCTTCAAGACCTGATGATGCTTCCACTTTGGCCAAAGCAACCCTTTCAGTCTCAAACCAATCAACACAGATTGCACACCAAATTGGAAACTCACAGTACCCAGATTATTGTTATGTGCCTCAAGAACAGTCCATGTTGAGGATGCTGATGGAAAACCATGGACCAAGTGCAAAGCAAATTCAGAAAGCAGAGTTTTCCGAGGGAAGGGACTTTGATGCTGATATCTCCTCCGTGGTATACAGCAGTGACATGATACACAGGTTGTTTGGGAATCAGGAACATTCATTAGCTTCTGCAGGGCCTGTGGACACTGATTGCCTATGGAATTACTGA 1083 0.4358 MGSMENVSKPRKENQKFELPPGFRFHPTDEELINHYLAKKAVDNCFCAVAIGEVDLNKCEPWDLPGLAKMGETEWYYFCVRDRKYPTGLRTNRATDAGYWKATGKDKEIIMENALIGMKKTLVFYKGRAPKGEKTSWVMHEYRLEGKHNQPKPGMSEWVICRVFEKSPCGKKMHVPKCGRFNNSFGEEPSSPASLLPPLMESSPYNSETRTTAGELSQVTCFSDPNQVEDQNIHDDIVDSMETPILDFSTSSRPDDASTLAKATLSVSNQSTQIAHQIGNSQYPDYCYVPQEQSMLRMLMENHGPSAKQIQKAEFSEGRDFDADISSVVYSSDMIHRLFGNQEHSLASAGPVDTDCLWNY 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0443 360 Pfam No apical meristem (NAM) protein 20 144 IPR003441 GO:0003677|GO:0006355
Ssu3g0443 360 Gene3D NAC domain 28 169 IPR036093 GO:0003677|GO:0006355
Ssu3g0443 360 PANTHER ANAC079/ANAC080/ATNAC4 PROTEIN 4 357 - -
Ssu3g0443 360 ProSiteProfiles NAC domain profile. 19 166 IPR003441 GO:0003677|GO:0006355
Ssu3g0443 360 MobiDBLite consensus disorder prediction 1 21 - -
Ssu3g0443 360 SUPERFAMILY NAC domain 16 166 IPR036093 GO:0003677|GO:0006355
Ssu3g0443 360 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0443 Ssu-Chr3 10154849 10156305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0443 18 360 NAC Transcription Factor Family AT5G07680 49.570 6.13e-102 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu3g0443 NAM 2.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0443 - - gmx:100782172 648.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0443 3 10154849 10156305 Ssu3g0443 3 10154849 10156305 ECH
Ssu3g0443 3 10154849 10156305 Ssu8g2288 8 59823255 59824712 ECH