Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0442 ATGGGACGATCACCATGCTGTGACAAGGTTGGTCTAAAGAAAGGACCATGGACGCCAGAGGAAGATCAGAAGCTCTTGGCTCATATTGAAGAACATGGCCATGGAAGCTGGCGTGCTTTGCCAGCAAAAGCTGGGCTTCAGAGGTGTGGCAAGAGCTGCAGATTGAGATGGACTAATTATCTAAGGCCTGATATTAAAAGGGGAAAGTTCAGTATGCAAGAAGAACAAACCATCATTCAACTCCATGCACTCTTAGGGAACAGGTGGTCGGCAATAGCCACACATTTGCCAAAGAGAACAGATAACGAGATCAAGAACTACTGGAACACTCATCTTAAGAAAAGGTTAGACAAAATGGGCATTGACCCGGTGACCCACAAGCCCAAGAACGATGCCCTTCTCCCCACTGAGGGTCATTCCAAGAGTGCTGCCAACCTTAGCCACATGGCTCAGTGGGAGAGTGCTAGGCTTGAAGCTGAAGCAAGACTAGTCAGAGAATCAAAACTATGTTCTTCACACTCATCATTGCACCACCCCCTTGGCACAGTACCATCACCATCATCTTCAGCTCCAACACTAAACAAACCCGATGCACCACCAATGATGATACCCTCCTCATCACGTTCTCTTGATCATGTTGCAACTAGGGTCAGTGACCTCGAGTCCCCCACGTCTACGTTATCTTTCTCTGAGAACAACGCGGCACCAGTTATGACTAGTGTGATAGAGTTTGTGGCTTCTTCGGAGAGAGGGACagtgaaggaagaagaagagtggAACAAGGGTTATGAAAGCTCGACCCATTTGGGAGAATACAAAGATGACGTGGAGAATTCAATGCCTTTCACGTCTAGTCTGCATGAGTTGACGATGACCATGGCAACCACGTGGGGTTCAGCCACAAGTCTCTTGGGACCACCACTACTAGTAGTGCACATGCACATGCACATGTACATGTTGCTGAGGAGGGATTCACCGGCCTTTTGCTGA 990 0.4717 MGRSPCCDKVGLKKGPWTPEEDQKLLAHIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSMQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLDKMGIDPVTHKPKNDALLPTEGHSKSAANLSHMAQWESARLEAEARLVRESKLCSSHSSLHHPLGTVPSPSSSAPTLNKPDAPPMMIPSSSRSLDHVATRVSDLESPTSTLSFSENNAAPVMTSVIEFVASSERGTVKEEEEWNKGYESSTHLGEYKDDVENSMPFTSSLHELTMTMATTWGSATSLLGPPLLVVHMHMHMYMLLRRDSPAFC 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0442 329 CDD SANT 69 112 IPR001005 -
Ssu3g0442 329 CDD SANT 16 61 IPR001005 -
Ssu3g0442 329 SMART sant 13 63 IPR001005 -
Ssu3g0442 329 SMART sant 66 114 IPR001005 -
Ssu3g0442 329 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu3g0442 329 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 304 - -
Ssu3g0442 329 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Ssu3g0442 329 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu3g0442 329 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ssu3g0442 329 Gene3D - 13 66 - -
Ssu3g0442 329 Gene3D - 68 141 - -
Ssu3g0442 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu3g0442 329 MobiDBLite consensus disorder prediction 173 194 - -
Ssu3g0442 329 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu3g0442 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu3g0442 329 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0442 Ssu-Chr3 10118946 10121312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0442 1 237 MYB Transcription Factor Family AT3G01140 70.954 7.18e-115 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu3g0442 Myb_DNA-binding 4.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0442 K09422 - gmx:100794047 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0442 3 10118946 10121312 Ssu3g0442 3 10118946 10121312 ECH