Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0439 ATGAGATGGTTGAACTATCTAAAGCCAAATATCAAGTGGGGAGATTTTAGTGAAGATGACGTTGATATGATGATCAGACTGCATAAGCTTTTGGGAAACAGGTGCAGCTTCATTAGGGTCGGGAATCGGTGGGAAACTTCGTTAAATGATAAGGAGGACAATGTAGGTAACAACAAAACATGCTTCTTTGGTGGGGAAGATGGAGCGCTTGACCATTGGGATGAACAGCTTACTTCAATTGCTTGTGACTTTCTTACAGAAGTTGAAACTTGGAGTGATTTTCTTCTTGACCTGGGAgattag 303 0.4059 MRWLNYLKPNIKWGDFSEDDVDMMIRLHKLLGNRCSFIRVGNRWETSLNDKEDNVGNNKTCFFGGEDGALDHWDEQLTSIACDFLTEVETWSDFLLDLGD 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0439 100 SUPERFAMILY Homeodomain-like 2 38 IPR009057 -
Ssu3g0439 100 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 1 52 - -
Ssu3g0439 100 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0439 Ssu-Chr3 10045504 10046512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0439 1 53 MYB Transcription Factor Family AT1G66370 50.794 6.31e-13 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0439 - K09422 pvu:PHAVU_008G038400g 102.064