Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0437 ATGGAAGGATCATCAGGTGTGAGGAAAGGCGCATGGAGTAAATGTGAAGATGACCTTCTCAAAGCTTGCGTGCAACTTTACGGGGAAGGAAAATGGCACCTTGTTCCTGAAAGAGCAGTTGTGTGCATGGTTCTAATTTGCGGTCCACAActgcaattgcggccgcaacgtaAAGATCTTTCGACTTACCACAACCGCATCGCGACTGCAATTACAGTTGCATCAGCCGCATTTTCCCACAGTTTGCCACAATGTCAAGGATCGCGACAAAACCGCAACtgcgaccgcaaccgcaatttagaaccatggttgtGTGCATGCGCCCTCCTTGCACcaggaaaaacaaaatatattgtaataaacatttttatatcttcTTGCGTTTGGTACGTAGGCTTGAACAGATGCCGCAAGAGTTGTAGAATGAGATGGTTGAACTATCTAAAACCAAATATCAAACGAGGAGATTTTAGTGAAGATGAGATAGATATGCTGATCAGATTGCATAAGCTTTTGGGAAACAGGTGGTCCATGATTGCAGGAAGACTTCCGGGAAGAACTTCAAATGGTGTGAAAAATTACTGGAACACCTACATGCGCCGTAAAGTAAACCCTCACAAGGAAGACAACAACGTAAAGCAGAAAGAGGCCGAATCAACAATAAAACCCCCCGAAGTGATAAAGCCTGTACCTCTAGCTTTGTCAAAATCATCCCCGTGGTTGCAAAGGAAATTCATTAGTGGTTCCAAAGTTGGTGTTAGTGAAGCAGGTGCAGCTTCATCAGGGTCTGGGAATTGGTGGGAAACTTTGTTAAGTGACAAGGAAGACAATGCAGGTAACAACAACACATGCTTCTTTGGTGGGGTAGATGGAGCGCTTGACCTTTGGGAGGAAGAGCTTACTTCAATTGCTTGTCACTTTCTTACAGAAGGTGAAACTTGGAGTGATTTTCTCCTTGACCAGGAGATTAATGTGTAA 978 0.4018 MEGSSGVRKGAWSKCEDDLLKACVQLYGEGKWHLVPERAVVCMVLICGPQLQLRPQRKDLSTYHNRIATAITVASAAFSHSLPQCQGSRQNRNCDRNRNLEPWLCACALLAPGKTKYIVINIFISSCVWYVGLNRCRKSCRMRWLNYLKPNIKRGDFSEDEIDMLIRLHKLLGNRWSMIAGRLPGRTSNGVKNYWNTYMRRKVNPHKEDNNVKQKEAESTIKPPEVIKPVPLALSKSSPWLQRKFISGSKVGVSEAGAASSGSGNWWETLLSDKEDNAGNNNTCFFGGVDGALDLWEEELTSIACHFLTEGETWSDFLLDQEINV 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0437 325 SMART sant 153 201 IPR001005 -
Ssu3g0437 325 SMART sant 8 150 IPR001005 -
Ssu3g0437 325 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 131 228 - -
Ssu3g0437 325 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 40 - -
Ssu3g0437 325 CDD SANT 11 38 IPR001005 -
Ssu3g0437 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 149 203 IPR017930 -
Ssu3g0437 325 Gene3D - 3 104 - -
Ssu3g0437 325 SUPERFAMILY Homeodomain-like 6 43 IPR009057 -
Ssu3g0437 325 CDD SANT 157 199 IPR001005 -
Ssu3g0437 325 Pfam Myb-like DNA-binding domain 154 198 IPR001005 -
Ssu3g0437 325 Gene3D - 156 225 - -
Ssu3g0437 325 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 131 228 - -
Ssu3g0437 325 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 6 40 - -
Ssu3g0437 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 38 IPR017930 -
Ssu3g0437 325 ProSiteProfiles Myb-like domain profile. 149 199 IPR001005 -
Ssu3g0437 325 SUPERFAMILY Homeodomain-like 134 204 IPR009057 -
Ssu3g0437 325 Gene3D - 107 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0437 Ssu-Chr3 9937057 9939005 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0437 2 39 MYB Transcription Factor Family AT1G66370 55.263 1.57e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu3g0437 Myb_DNA-binding 5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0437 - K09422 gmx:100780023 300.827