Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0436 ATGGAAGGATCATCAGGTGTGAGGAAAGGCGCATGGAGTAAATGTGAAGATGACCTTCTCAAAGCTTGCGTGCAACTTTACGGGGAAGGAAAATGGCACCTTGTTCCTGAAAGAGCAGGCTTGAACAGATGCCGCAAGAGTTGTAGAATGAGATGGTTGAACTATCTAAAACCAAATATCAAACGAGGAGATTTTAGTGAAGATGAGATAGATATGCTGATCAGATTGCATAAGCTTTTGGGAAACAGGTGGTCCATGATTGCAGGAAGACTTCCGGGAAGAACTTCAAATGGTGTGAAAAATTACTGGAACACCTACATGCGCCGTAAAGTAAACCCTCACAAGGAAGACAACAACGTAAAGCAGAAAGAGGCCGAATCAACAATAAAACCCCCCGAAGTGATAAAGCCTGTACCTCTAGCTTTGTCAAAATCATCCCGTGGTTGCAAAGGAAATTCATTAGTGGTTCCAAAGTTGGTGTTAGTGAAGCAGGTGCAGCTTCATCAGGGTCTGGGAATTGGTGGGAAACTTTGTTAA 537 0.4339 MEGSSGVRKGAWSKCEDDLLKACVQLYGEGKWHLVPERAGLNRCRKSCRMRWLNYLKPNIKRGDFSEDEIDMLIRLHKLLGNRWSMIAGRLPGRTSNGVKNYWNTYMRRKVNPHKEDNNVKQKEAESTIKPPEVIKPVPLALSKSSRGCKGNSLVVPKLVLVKQVQLHQGLGIGGKLC 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0436 178 Gene3D - 63 133 - -
Ssu3g0436 178 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Ssu3g0436 178 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Ssu3g0436 178 Gene3D - 9 61 - -
Ssu3g0436 178 CDD SANT 11 56 IPR001005 -
Ssu3g0436 178 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Ssu3g0436 178 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Ssu3g0436 178 CDD SANT 65 107 IPR001005 -
Ssu3g0436 178 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Ssu3g0436 178 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 6 129 - -
Ssu3g0436 178 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Ssu3g0436 178 SMART sant 61 109 IPR001005 -
Ssu3g0436 178 SMART sant 8 58 IPR001005 -
Ssu3g0436 178 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 129 - -
Ssu3g0436 178 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0436 Ssu-Chr3 9871707 9873486 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0436 2 172 MYB Transcription Factor Family AT1G66370 52.571 3.89e-56 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu3g0436 Myb_DNA-binding 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0436 - K09422 gmx:100780023 263.848