Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0435 ATGGAAGGATCATCGGGTGTGAGGAAAGGCTCATGGAGTAAATGTGAAGATGACCTTCTCAAAGCTTGCGTGAAACTTTATGGGGAAGGAAAATGGCACCTTGTTCCTCAAAGAGCAGGGTTGAACAGATGCCGCAAGAGTTGTAGATTGAGATGGTTGAACTATCTAAAACCAAATATCAAGCGGGGAGATTTTAGTGAAGATGAGGTTGATATGATGATCAGACTGCATAAGCTTTTGGGAAACAGCTGTGCATATGCTATTAACTAA 270 0.4185 MEGSSGVRKGSWSKCEDDLLKACVKLYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLKPNIKRGDFSEDEVDMMIRLHKLLGNSCAYAIN 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0435 89 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 60 IPR017930 -
Ssu3g0435 89 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Ssu3g0435 89 Gene3D - 9 61 - -
Ssu3g0435 89 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 6 83 - -
Ssu3g0435 89 SUPERFAMILY Homeodomain-like 10 83 IPR009057 -
Ssu3g0435 89 SMART sant 8 58 IPR001005 -
Ssu3g0435 89 CDD SANT 11 56 IPR001005 -
Ssu3g0435 89 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Ssu3g0435 89 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0435 Ssu-Chr3 9854782 9855223 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0435 2 82 MYB Transcription Factor Family AT1G66370 69.136 7.08e-37 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu3g0435 Myb_DNA-binding 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0435 - K09422 gmx:100781091 169.474