Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0434 ATGAGATGGTTGAACTATCTAAAACCAAATATCAAGCGGGGAGATTTTAGTGAAGATGAGGTTGATATGATGATCAGATTGCATAAGCTTTTGGGAAACAGATGGTCCCTTATTGCAGGGAGACTTCCAGGAAGAacttcaaatgatgtgaaaaatTACTGGAACACCTACCTGCGCCATAGAGTATACTCTCACAAGAAAGACAACAACGTAAAAAAGCAAGAGGCCGAATCAACCATGGAACCCCCCAAAGTGATAAAGCCTGTACCTCAAGTTTTCCCAAAATCACCCCTGTGGTTGCAAGGGAAATTCAGTAGTAGTAGTTCCAAAGTTGGTATTAGTGAAGCAGGCGAAGCTTCATCAGGGTCTTGGAATTGGTGGGAAACTTTGTTAGATGAAAAGGAAGACAATGCAGGTAACAACAACGCATGCTTCTTTGGTGGGGGAGATGGGGCGCTTGACCTTTAG 468 0.4188 MRWLNYLKPNIKRGDFSEDEVDMMIRLHKLLGNRWSLIAGRLPGRTSNDVKNYWNTYLRHRVYSHKKDNNVKKQEAESTMEPPKVIKPVPQVFPKSPLWLQGKFSSSSSKVGISEAGEASSGSWNWWETLLDEKEDNAGNNNACFFGGGDGALDL 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0434 155 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 1 103 - -
Ssu3g0434 155 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 62 IPR017930 -
Ssu3g0434 155 SMART sant 12 60 IPR001005 -
Ssu3g0434 155 Pfam Myb-like DNA-binding domain 13 58 IPR001005 -
Ssu3g0434 155 ProSiteProfiles Myb-like domain profile. 8 58 IPR001005 -
Ssu3g0434 155 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 103 - -
Ssu3g0434 155 Gene3D - 14 86 - -
Ssu3g0434 155 SUPERFAMILY Homeodomain-like 2 64 IPR009057 -
Ssu3g0434 155 CDD SANT 16 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0434 Ssu-Chr3 9830842 9833339 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0434 1 93 MYB Transcription Factor Family AT1G66370 58.763 3.22e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu3g0434 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0434 - K16166 gmx:100781091 225.713