Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0429 ATGGCAGCTTGCATGTTCACGGTGTCACAGGACGGAACCGGTGATTTCCAAACGGTGCAGGATGCAATCAACGCCGTGCCGCTCGGCAACACTCGCCGGACGGTGATCCGGGTCTCGCCGGGAATCTACCGGCAAGCGGTGTACGTCCCCAAGACCAAGAATTTCATCACTCTCGCCGCTCTGTCTCCTGAGGACACCGTGCTTACCTGGAAAAACACTGCCACCGTAATCGATCACCACCAACCTGCGAGGGTGATAGGGACTGGGACGTTTGGTTGTGCAAGTACCATTGTGGAAGGGGAGGACTTTATTGCTGAGAATATTACTTTTGAGAATTCTGCTCCTGAGGGTTCAGGGCAAGCAGTTGCAATTAGAGTAACAGCAGATCGATGTGCCTTCTACAATTGCAGGTTCCTTGGATGGCAGGACACACTGTACTTACATTATGGTAAACAATATTTGAAAGATTGCTACATTGAGGGAAGTGTGGACTTCATCTTTGGCAATAGCACTGCTCTTTTGGAGCACTGTCATATCCACTGCAAGTCTGCAGGCTTCATAACTGCACAGAGCAGAAAATCATCGCAGGAAACATCTGGTTATGTATTCTTGAGATGTGTCATCACAGGTAATGGAGGAAGTTCATATGCATACCTTGGACGACCATGGGGACCTTTTGCAAAGGTAGTCTTTGCGTACACTTACATGGATCAATCTATAAGGCATGTTGGCTGGGATAACTGGGGGAAAATGGAGAATGAGAGAAGTGCTTGCTTTTATGAATACAGGTGTTTTGGACCTGGTTGCTGTCCATCCAAACGAGTAACATGGTGTAGAGAATTGATGGATGAAGAAGCTGAGCAGTTCCTCACGCATCCTTTCATTGATCCAGAGCCAGAGAAACCTTGGCTTGCACAAAGGATGGCCCTCAGGATTCCATATTCTGCTTGA 951 0.4805 MAACMFTVSQDGTGDFQTVQDAINAVPLGNTRRTVIRVSPGIYRQAVYVPKTKNFITLAALSPEDTVLTWKNTATVIDHHQPARVIGTGTFGCASTIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSAGFITAQSRKSSQETSGYVFLRCVITGNGGSSYAYLGRPWGPFAKVVFAYTYMDQSIRHVGWDNWGKMENERSACFYEYRCFGPGCCPSKRVTWCRELMDEEAEQFLTHPFIDPEPEKPWLAQRMALRIPYSA 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0429 316 Pfam Pectinesterase 7 296 IPR000070 GO:0030599|GO:0042545
Ssu3g0429 316 Gene3D - 3 310 IPR012334 -
Ssu3g0429 316 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 315 - -
Ssu3g0429 316 SUPERFAMILY Pectin lyase-like 3 298 IPR011050 -
Ssu3g0429 316 ProSitePatterns Pectinesterase signature 2. 159 168 IPR033131 -
Ssu3g0429 316 PANTHER PECTINESTERASE 1 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0429 Ssu-Chr3 9790202 9793665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0429 5 309 Carbohydrate Esterase AT5G47500 37.261 6.36e-69 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0429 K01051 - gmx:100786786 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0429 3 9790202 9793665 Ssu3g0429 3 9790202 9793665 ECH