Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0426 ATGGCAAGGAAGAGAAAGGTTGCTGAAGCAGTTGAGGAGAGGAATCCATCTGAGGCAACCATAGCATGGAATGGGATGATGAAAGAAGCTGCTGCAGTAGGAAGTGCCAGGAGATTGAGGAAGAGATTTGTTGGGGTGAGACAAAGGCCTTCAGGAAGATGGGTAGCTGAGATAAAGGATACCATTCAGAAGATAAGAGTGTGGTTAGGCACTTTTGATACAGCTGAGGAAGCTGCAAGAGCCTATGATGAGGCTGCTTGCCTTCTTCGCGGTGCCAACACTAGAACAAACTTCTGGCCTTGTTCTCAATCTTCCTCAACTCCTGCTCTGCCCTCAAAGATTACCGATCTCCTCCTTCAAAGGCTTAAAGCAAGAAATACCAACCCTTGCTctctttcttcatcttcttcctcaTCCACTTTTATCAACCACCAACAAAAGCAACAAGAGGATGCATGTGGAACTGAGTCAACTTATTTCTCAATGGACCAATTCACAGATTTCCTTAATGACCCTGAAGATTATAGCAcaagcaacaatgagtttagTAATGATAGTGCACAAATTGATTACATCACAAGTAGTCTTGAATCATGTTTGAATGAAAAAGATGATTGCAaggaaaaagaaacagaaatggAATTTGATTTCAGCAGTGTGACACAAACATCAAGGGGTGATATAAATTCAGGAGGGGAAAGAGAGGAAGACAATGAAGAAGGTACTGATTTGAGTGCTCAGGATTTTCAGTTCCTGGACAATGTTGTTCCATCCAGTTACTATTGTTCACCTTTTGAGATTGCTGAAGAGATTGAGGAGCAACTGGAGCCAGAGAACTATGGTGATGAGCTTTCAATGCTAAGAGCAGTCATGAAGAGAATGAAATATGAGAGGAAGTTTTCAGCTTCCCTTTATGCCTTCAATGGAATACCTGAGTGCTTGAAGTTGAAACTTGAATCAGGAAACAAAAATGGAAGAGGGGTTTGTAATCAACTAACCAACCTCAAGATGGCTTGTAGCAGAAACAAAGTTGAGGCTAATAAGAAGAATGAAGAATGCATGGAATCAATGGatagaaaagaggaagaaaaccCACAAACATCAATTGGCATGGATTGCTCTTCCCCCTCTTTTTCATCCAGTATTGATGATGGAGAACTGTTACTTTGGAATTCACTTGATCTTCCTACTATTTGCTTTGTTAACTAG 1209 0.3854 MARKRKVAEAVEERNPSEATIAWNGMMKEAAAVGSARRLRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSSTPALPSKITDLLLQRLKARNTNPCSLSSSSSSSTFINHQQKQQEDACGTESTYFSMDQFTDFLNDPEDYSTSNNEFSNDSAQIDYITSSLESCLNEKDDCKEKETEMEFDFSSVTQTSRGDINSGGEREEDNEEGTDLSAQDFQFLDNVVPSSYYCSPFEIAEEIEEQLEPENYGDELSMLRAVMKRMKYERKFSASLYAFNGIPECLKLKLESGNKNGRGVCNQLTNLKMACSRNKVEANKKNEECMESMDRKEEENPQTSIGMDCSSPSFSSSIDDGELLLWNSLDLPTICFVN 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0426 402 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 339 - -
Ssu3g0426 402 MobiDBLite consensus disorder prediction 211 243 - -
Ssu3g0426 402 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Ssu3g0426 402 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Ssu3g0426 402 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Ssu3g0426 402 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Ssu3g0426 402 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Ssu3g0426 402 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Ssu3g0426 402 Coils Coil 343 363 - -
Ssu3g0426 402 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 4 339 - -
Ssu3g0426 402 MobiDBLite consensus disorder prediction 350 366 - -
Ssu3g0426 402 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Ssu3g0426 402 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Ssu3g0426 402 MobiDBLite consensus disorder prediction 350 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0426 Ssu-Chr3 9752551 9753759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0426 40 98 AP2-EREBP Transcription Factor Family AT5G19790 86.441 2.83e-31 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu3g0426 AP2 7.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0426 K09286 - gmx:100796159 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0426 3 9752551 9753759 Ssu3g0426 3 9752551 9753759 ECH