Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0425 atgGATGGAGCAGGCCAAGGTAATGGTGCAGTCCTGGACCTGTttctaacaaattataaattgggAAAAACACTTGGTCTGGGATCCTTGGGCAATGTGAAAATTGCAGAACATGTATTGACTGGCCAGAATGTTGCCATCAGGATCCTTAAACGTCGCGAGATAAAGAACATGGAAGTggaagaaaaagTGAAAAGAAAAATCGAAATTTTAAGATTACTCATGCATCCTCACATTATACAACTTTATGAGGTCGTAGAAACTCCAACTGACATATATGTTGTTATGGAGTATGCGAAATCTGGAGAGCTCTTTGATTACATAGTGGAAAAGGGTAGGTTACAAGAAGATGAAGCTCGTAATATTTTTCAGCAGCAGACTATCTCTGGTGTGGAGTACTGTCACAGCAACATGGTGGTTCATAGAGATCTGAGGCCTGAGAAAATACTTTTGGACTCCAAATGTGATGTCAAGATTGCTGGATTTGGCTGGAGCAACATTATGCGTGATGGttactttcttaagacaagatgTGGAAGTTGTAACTATGCAGCTCCCGAGGTTATCTCTGGGAAACTGTATGCTGGACCTGAAGTTGATGTATGGAGCTGTGGTGTAATTTTATATACGCTTCTTTGTGGTACTCTACCTTTCGACGATGAAAACATTCCAAATCTCTTCAAgaaaataaaggGAGGGATTTTCACTCTTCCATGCCATTTATCTCCTGAAGCTAGAGATTTGATACCAAAGATGCTCGATGCGGACCCTGTCAAGAGGATGACCATACCTGAGATCCGTCAGCACCCATGGTTCCAACATGATCTTTTGCCTTCTCTAGCTGTTCCAGAACCATATACAATGAGATGGGCCAAATTTGTTACTGGCCTGGACATGTATCTACCAAATTATAAATTGGGAAAGACACTTGGGATCGGATCTTTTGGCAAGGTCAAAATTGCAGAACATGGATTGACTGGCCATAAGGTTGCAATCAAGATCCTTAACCGACGCAAGATAAAGAACatggaaatggaagaaaaagTGAgaagagaaatcaaaattttaagattgttCATGCATCCTCACATTATACGACTTTATGAAGTCATAGAAACTCCAACTGACATATATGTTGTTATGGAGTATGTGAAATCTGGAGAGCTCTTTGATTACATAGTAGAGAAGGGTAGGTTGCAGGAAGATGAAGCTCGTAATTTTTTTCAGCAGATAATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGATTTGAAGCCTGAGAATTTACTTTTGGACTCCAAATGTAATGTCAAGATTGCTGATTTTGGCTTGAGCAACATCATGCGtgatggtcactttcttaagacaagttgTGGAAGCCCTAACTATGCTGCTCCCGAGGTTATCTCTGGGAAATTGTATGCTGGACCTGAAGTGGATGTTTGGAGCTGTGGTGTGATTTTATATGCTCTTCTTTGTGGCACTCTGCCTTTTGATGATGAAAACATTCCAAATCTCTTCAAGAAAATAAAGGGTGGGATATACACTCTTCCCAGTCATCTATCACCTGGTGCTAGAGATTTGATACCAGGGATGCTTGTGGTTGACCCTATGAGGAGAATGACCATACCTGAGATCCGTCAACACCCATGGTTCCAAGCTCGTCTTCCGCGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAGGCCAAAAAGATTGATGAGGAGATCCTTCAGGAAGTGGTGAATATGGGATTTGACAGGAATCAATTGGTTGATTCTCTTCGGAATAGGATACAAAATGAGGGTACTGTGGCATACTATTTGTTATTGGACAACCGATTCCGTGTTTCCAGTGGCGGCTATCTTGGAGCTGAGTTTCAAGAGTCCATGGATTCCAGTTTTAACCAAATGCATCCCAGTGACGTTGCTTCTTCAGTTGTTGGACACCGCATTCCAGGCTATATGGATTATCCAATTTCAGGAGCAGGATCGAGACCACAGTTCCCTGTTGAAAGGAAATGGGCCCTTGGGCTTCAGTCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTTCTTAAAGCTTTGCAAGAATTAAATGTTTGTTGGAAGAAGATTGGTCACTACAACATGAAGTGCAGGTGGGTTGCTGGCATTCCTGGTCATCACGAAGGAATGGTTAACAATAATGTGCATAGTAATCATTACTTTGGAGATGATTCCAACATTATTGAGAATGATGCTGTTTCTACTTCAAACGTGGTCAAATTTGAAGTGCAGCTTTACAAAACTCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAGGGTCCACAGTTTCTTTTCTTGGATCTGTGTGCTGCTTTCCTTGCACAGCTTCGTGTCCTCTAG 2409 0.4006 MDGAGQGNGAVLDLFLTNYKLGKTLGLGSLGNVKIAEHVLTGQNVAIRILKRREIKNMEVEEKVKRKIEILRLLMHPHIIQLYEVVETPTDIYVVMEYAKSGELFDYIVEKGRLQEDEARNIFQQQTISGVEYCHSNMVVHRDLRPEKILLDSKCDVKIAGFGWSNIMRDGYFLKTRCGSCNYAAPEVISGKLYAGPEVDVWSCGVILYTLLCGTLPFDDENIPNLFKKIKGGIFTLPCHLSPEARDLIPKMLDADPVKRMTIPEIRQHPWFQHDLLPSLAVPEPYTMRWAKFVTGLDMYLPNYKLGKTLGIGSFGKVKIAEHGLTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPGMLVVDPMRRMTIPEIRQHPWFQARLPRYLAVPPPDTMQQAKKIDEEILQEVVNMGFDRNQLVDSLRNRIQNEGTVAYYLLLDNRFRVSSGGYLGAEFQESMDSSFNQMHPSDVASSVVGHRIPGYMDYPISGAGSRPQFPVERKWALGLQSRAHPREIMTEVLKALQELNVCWKKIGHYNMKCRWVAGIPGHHEGMVNNNVHSNHYFGDDSNIIENDAVSTSNVVKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0425 802 CDD STKc_AMPK_alpha 18 272 - -
Ssu3g0425 802 Gene3D Transferase(Phosphotransferase) domain 1 296 633 - -
Ssu3g0425 802 Gene3D Transferase(Phosphotransferase) domain 1 12 288 - -
Ssu3g0425 802 SUPERFAMILY Protein kinase-like (PK-like) 301 573 IPR011009 -
Ssu3g0425 802 SUPERFAMILY UBA-like 567 615 IPR009060 GO:0005515
Ssu3g0425 802 Gene3D Kinase associated domain 1, KA1 683 800 - -
Ssu3g0425 802 ProSitePatterns Protein kinases ATP-binding region signature. 310 333 IPR017441 GO:0005524
Ssu3g0425 802 SUPERFAMILY KA1-like 613 801 IPR028375 -
Ssu3g0425 802 PANTHER SERINE/THREONINE KINASE 293 801 - -
Ssu3g0425 802 PANTHER SERINE/THREONINE KINASE 8 282 - -
Ssu3g0425 802 CDD UBA_SnRK1_plant 578 618 - -
Ssu3g0425 802 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 577 617 IPR015940 -
Ssu3g0425 802 Pfam UBA/TS-N domain 578 614 IPR015940 -
Ssu3g0425 802 CDD STKc_AMPK_alpha 301 556 - -
Ssu3g0425 802 ProSiteProfiles Protein kinase domain profile. 19 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0425 802 Pfam Protein kinase domain 19 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0425 802 Pfam Protein kinase domain 304 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0425 802 CDD AMPKA_C 677 799 - -
Ssu3g0425 802 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 753 801 IPR001772 -
Ssu3g0425 802 Pfam Kinase associated domain 1 759 801 IPR001772 -
Ssu3g0425 802 ProSiteProfiles Protein kinase domain profile. 304 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0425 802 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 8 282 - -
Ssu3g0425 802 SMART uba_6 579 616 IPR015940 -
Ssu3g0425 802 SUPERFAMILY Protein kinase-like (PK-like) 16 291 IPR011009 -
Ssu3g0425 802 SMART serkin_6 19 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0425 802 SMART serkin_6 304 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0425 802 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Ssu3g0425 802 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 293 801 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0425 Ssu-Chr3 9705500 9749600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0425 304 556 CBL-interacting serine-threonine protein kinases AT4G24400 52.362 6.05e-89 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Ssu3g0425 Pkinase 6.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0425 K07198 - gmx:100796687 983.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0425 3 9705500 9749600 Ssu3g0425 3 9705500 9749600 ECH