Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0422 ATGGAAAATATTGCCTCTCTTGAAGAGGCCCTTTTGAATGGTGACAATAGTGTAAGCAACAGTTCTGATCCCAGTAAAACCAGAGGAAATGAAGTTTTAACCTGCTATTCAAATGCTGGATTTTTCAGCATTCTTACTTTCTCATGGATCAGTCCACTATTAAGTCTTGGCAATGAGAAGACTTTAGATCATGAGGACCTCCCACTGCTTGTCGCCGATGACACTGCCCACAGGGCCTTTACAACTTTTAGAAACAATCTCGAGTCAGAGTGTGGTAGTGTTAAGAGGGTGACCACTCTTAAGCTGGTGAAAGTGTTAATCTTCTCAACGTGGCAAGGGATTCTTTTATCTGGTTTGTTAGCATTCTTATGCACTTGTGCTTCTTATGTGGCACCCTATCTTATTGAAATCCTTGTTCAATACTTCAATCAGGAACATGAGTTTAAAAATGAAGGCTATATGTTGGCTATGGCATTTGTTGCTGCAAAGCTTGTGGAGTGTCTTTCACAGAGGCACTGGATGTTTAAATTGCAGCAGGTTGGTGTAAGGATGAAATCAATGTTGGTGGCAATGATCTATGCTAAAGGTTTGACTCTTTCATGTCAATCAAAGGAAGGTTACAGCAGTGGGGAAATCATCAACTTAATAACTGTGGATGCTGGAAGGGTTGGTCAACTTTGCTGGTACATTCATGCTCCATGGATATGTGTTCTGCAAGTTGCTTTGGCCTTGTTAATTCTCTATAGAAATGTTGGGGTGGCTTCAATAGCAGCTTTTGCTGCCACTGTAATTGTGATGGTGCTAAACTTTCCTGTTGCATCATTGCAAGAAAAGTTCCAAGGTAAGATAATGGAgttcaaagataaaagaatgaaGGCAACGTCTGAGATTGTAAAAAATATGAAGATTCTAAAACTTCAAGCATGGGAGATGAAGTTCTTATCAAAGATTTTTCAGCTTAGGAAGACTGAGGAGATATGGCTAAAGAAATTTCTAGTTAGCACAGCTACTATTACATTTCTCTTGTTTAATGCCTCAACTGTGATTGCTGTGGTCACTTTCAGTGCTTGTGTTCTTATAGGCATCCCTCTTGAATCAGGGAAAGTCTTATCTGCACTTACAACATTTGAAATTCTTCAAATGCCCATCTACAGTCTTCCTGACACAATTTCAATGATTGCACAAACTAAGGTTTCTCTTGATAGGATCTCATCATTTCTTTGTCTAGATGACTTGCAGACTGATGTAGTGGAGAAACTTCCACGGGGTAGTTCTGATAAAGCAATTGAATTAGTAGATGGAAATTTCTCTTGGGAGTTATCTTCCCTTAACAcaacattgaaaaatataaatctcaCAGTTTTTCATGGAATGAGGGTTGCTGTTTGTGGTACGGTTGGATCAGGCAAATCTAGTTTACTTTCTTGTATAATAGGTGAAATACCTAAGATATCTGGGACCCTGAAGGTGTGTGGATCAAAGGCTTATGTTTCTCAATCACCATGGATACAAAGTGGCACCATAGAAGAGAACATATTATTTGGTAAAGAGATGGACAAGGAAAAGTATGAGAAGGTGCTAGAAGCATGTTCCTTGACAAAAGACCTAGAGGTTCTACCATTTGGTGATCAGACCATTATTGGAGAGAAGGGAATCAATTTGAGTGGTGGACAGAAGCAAAGAGTACAAATAGCACGTGCACTTTACCAAGATGCTGACATTTATTTGTTTGATGATCCCTTCAGTGCTGTGGATGCTCATACAGGATCTCATCTCTTTCGGgCTCTAGATATGTGCCAACTTGGAGATGAAGTAAGGAAGAAAGAAGGGAAGCTTGACTCCATAGGGCTTATTGAGGAATATGATTCACCAAAGAAACTGCTTAAGAACAAATCTTCATCTCTTGCTCAACTAGTTGCAGAATACACAGGGAGGTCAAACTCTGGTTTTGGAAGTTAA 1959 0.389 MENIASLEEALLNGDNSVSNSSDPSKTRGNEVLTCYSNAGFFSILTFSWISPLLSLGNEKTLDHEDLPLLVADDTAHRAFTTFRNNLESECGSVKRVTTLKLVKVLIFSTWQGILLSGLLAFLCTCASYVAPYLIEILVQYFNQEHEFKNEGYMLAMAFVAAKLVECLSQRHWMFKLQQVGVRMKSMLVAMIYAKGLTLSCQSKEGYSSGEIINLITVDAGRVGQLCWYIHAPWICVLQVALALLILYRNVGVASIAAFAATVIVMVLNFPVASLQEKFQGKIMEFKDKRMKATSEIVKNMKILKLQAWEMKFLSKIFQLRKTEEIWLKKFLVSTATITFLLFNASTVIAVVTFSACVLIGIPLESGKVLSALTTFEILQMPIYSLPDTISMIAQTKVSLDRISSFLCLDDLQTDVVEKLPRGSSDKAIELVDGNFSWELSSLNTTLKNINLTVFHGMRVAVCGTVGSGKSSLLSCIIGEIPKISGTLKVCGSKAYVSQSPWIQSGTIEENILFGKEMDKEKYEKVLEACSLTKDLEVLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLFDDPFSAVDAHTGSHLFRALDMCQLGDEVRKKEGKLDSIGLIEEYDSPKKLLKNKSSSLAQLVAEYTGRSNSGFGS 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0422 652 CDD ABC_6TM_ABCC_D1 116 403 IPR044746 GO:0140359
Ssu3g0422 652 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 115 395 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu3g0422 652 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 426 597 IPR027417 -
Ssu3g0422 652 Gene3D ABC transporter type 1, transmembrane domain 87 410 IPR036640 GO:0005524|GO:0016021
Ssu3g0422 652 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 5 594 - -
Ssu3g0422 652 SUPERFAMILY ABC transporter transmembrane region 108 403 IPR036640 GO:0005524|GO:0016021
Ssu3g0422 652 ProSitePatterns ABC transporters family signature. 554 568 IPR017871 GO:0005524
Ssu3g0422 652 Pfam ABC transporter transmembrane region 115 382 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu3g0422 652 CDD ABCC_MRP_domain1 429 594 - -
Ssu3g0422 652 SMART AAA_5 456 633 IPR003593 -
Ssu3g0422 652 Pfam ABC transporter 447 581 IPR003439 GO:0005524
Ssu3g0422 652 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 5 594 - -
Ssu3g0422 652 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 429 640 IPR003439 GO:0005524
Ssu3g0422 652 Gene3D - 411 647 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0422 Ssu-Chr3 9628020 9636655 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0422 400 635 Calmodulin-binding Proteins AT2G36910 31.559 1.01e-20 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0422 - K05666 gmx:100795627 1031.17