Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0421 ATGGAGCCTTTCACTTGCTCTGCACCTTCACCTGTTGGCAAGAAGAAGGTTCTCTTCATAATGGGTGCAACTGGCACTGGCAAAACCAAGCTTTCCATCAGCTTGGGAACTCAATTCCCCTCTGAAATCATCAACTCTGACAAAATCCAAGTCTATAAAGGCCTTGACATCATCACTAACAAGGTGCCAGAGTCTGAACGTTGTGCCATTCCTCATCACCTGCTAGGCATCATCGACGACCCTGATTATGACTTCACCGTTGATGACTTTTGCAAGCATGTCCTCGCTGCTCTTGATCTCATCATTGAAAAAGGACATCTACCAATTATCGTGGGAGGCTCAAACACTTACCTCGCAGCATTGCTTGAGGAACCCAACATCGCATTTCGTTCCAAATATGATTGTTGCTTCATCTGGCTTGATGTGTCTTTGCCTGTGCTGTTTCAGTATTTAGATAAAAGGGTGGATGAAATGCTTGATGCAGGAGTTGTGGATGAGATTCAAGAAGCTTTTGTGCCTGGAGTAGATTACTCTCGTGGCGTTAGAAGAGCCATTGGGGTTCCTGAGCTGGTAGAGTATTTCTTGGTAGAGAAGGAAATATATGATGAGGCTCAAAAGGACAAGATGTTCCAACATGCCATTGCGAGAATCAAAGAGAACACTTGTAAGTTGGCTGAGATGCAACTCCTAAAGATCCATAGGATGAATTATGAGCTTGAATGGAGAATGATCAAAATTGATTCCACACAAGTGTTCGAGGCTGTTTTAAAAGGAATGGATTATAAGAACTTGTACCAAGAGATTGTGTTCAAACCAAGCATGAAGATAGTGAAAAGATTTCTAGAGGAGACAACTCAGGACGGGGGAAATACCCCGCACCAAAATGGTGAAGAACTGAAGATTTCTACTTCAAACATCGTTGAATTTGGCTAA 933 0.4287 MEPFTCSAPSPVGKKKVLFIMGATGTGKTKLSISLGTQFPSEIINSDKIQVYKGLDIITNKVPESERCAIPHHLLGIIDDPDYDFTVDDFCKHVLAALDLIIEKGHLPIIVGGSNTYLAALLEEPNIAFRSKYDCCFIWLDVSLPVLFQYLDKRVDEMLDAGVVDEIQEAFVPGVDYSRGVRRAIGVPELVEYFLVEKEIYDEAQKDKMFQHAIARIKENTCKLAEMQLLKIHRMNYELEWRMIKIDSTQVFEAVLKGMDYKNLYQEIVFKPSMKIVKRFLEETTQDGGNTPHQNGEELKISTSNIVEFG 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0421 310 Gene3D - 14 281 IPR027417 -
Ssu3g0421 310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 173 IPR027417 -
Ssu3g0421 310 Pfam IPP transferase 131 229 - -
Ssu3g0421 310 Pfam IPP transferase 50 124 - -
Ssu3g0421 310 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 144 243 - -
Ssu3g0421 310 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 12 289 - -
Ssu3g0421 310 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 12 289 IPR039657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0421 Ssu-Chr3 9594741 9595673 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0421 98 288 C2H2 Transcription Factor Family AT2G27760 29.493 6.00e-20 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0421 K10760 - gmx:121173984 517.694