Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0418 ATGAGGGTTGCTGTTTGTGGTACGGTTGGATCAGGCAAATCTAGTTTACTTTCTTGTATAATAGGTGAAATACCTAAGATATCTAGGACCCTGAAGGTGTGTGGATCAAAGGCTTATGTTTCTCAATCACCATGGATACAAAGTGGCACGATAGAAGACAACATATTATTTGGTAAAGAGATGGACAAGGAAAAGTATGAGAAGGTGCTAGAAGCATGTTCCTTGACAAAAGACCTAGAGGTTCTACCATTTGGTGATCAGACCATTATTGGAGAGAAGGGAATCAATTTGAGTGGTGGACAGAAGCAACGAGTACAAATAGCCCCTTCTCTTTACCAAGATGCtggcatttatttatttgatgatcCCTTCAGTGTTGTGGATGCTCATACAGGATCTCATCTCTTTAGGTTACTGAGAATGGAGAAAATTGGAGTATGGGTCAAAGGCAATTGGTCTACCTTGGCCGTGTTCTACTTAAGAAAAGCAAGATATCGGTGCTTGATGAAGCTACAGCCTCAGTTGATACAGCCACAGATAATATTATTCAGCACAGTCATTACCATTTCTCATAGAATAACTTCAATCCTGGATAGTGACATGGTTCTGTTTCTAAATCAAGGGCTTATTGAGGAATATGATTCACCAAAGAAACTGCTTAAGAACAAATCTTCATCTCTTGCTCAACTAGTTGCAGAATACACAAGGAGGTCAAACTCTGGTTTTGGAAGTTAA 735 0.3864 MRVAVCGTVGSGKSSLLSCIIGEIPKISRTLKVCGSKAYVSQSPWIQSGTIEDNILFGKEMDKEKYEKVLEACSLTKDLEVLPFGDQTIIGEKGINLSGGQKQRVQIAPSLYQDAGIYLFDDPFSVVDAHTGSHLFRLLRMEKIGVWVKGNWSTLAVFYLRKARYRCLMKLQPQLIQPQIILFSTVITISHRITSILDSDMVLFLNQGLIEEYDSPKKLLKNKSSSLAQLVAEYTRRSNSGFGS 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0418 244 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 183 243 - -
Ssu3g0418 244 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 224 IPR027417 -
Ssu3g0418 244 CDD ABCC_MRP_domain1 3 208 - -
Ssu3g0418 244 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 1 137 - -
Ssu3g0418 244 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 141 IPR027417 -
Ssu3g0418 244 Gene3D - 1 241 IPR027417 -
Ssu3g0418 244 SMART AAA_5 2 209 IPR003593 -
Ssu3g0418 244 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 137 - -
Ssu3g0418 244 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 183 243 - -
Ssu3g0418 244 Pfam ABC transporter 2 124 IPR003439 GO:0005524
Ssu3g0418 244 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 232 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0418 Ssu-Chr3 9447556 9454382 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0418 3 231 Calmodulin-binding Proteins AT2G36910 26.230 1.29e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0418 - K05666 gmx:106794105 261.151