Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0417 ATGTCTCACGACCGTTCGCGACATCCTCGAAAATCCTCCGCGGATCTCGCgcagatagagagagagataaaaaagaaaggCTTCGTTTTCCTCGGAGCCCGCTTCCGAGCCGGGTCGACCCGCCGGCAAATGGGTTGTGCGAGCTCGAAGAAGGCGGTGGCCGGAGCCGGTTCTACGCCGGCGGGGCCACACGTGGTGCGTTCGAGTTCGCGGAAGCAGGGCAATGGGTCGGGGCGAAACGGCGCCGCGGAGAGCCGAGAGGGGGAGCGGAGATCGGAGGAGGGGAAGGAGTGTAGGAAGGGGAGCTTGAGAGGGTCGGTGTCGTTGAGGTTTGTGGAGGCTGAGCAGATTGCGGCTGGGTGGCCACCTTGGCTTACCTCTGCTGCTGGGGAAGCCATTCAAGGGTGGGTCCCTCTCAAAACGGATTCTTTTGAGAGATTGGATAAGATTGGACAAGGTACATATAGCAGTGTATTCCAAGCACGTGAAGTTGAAACTGGGAGGATGGTTGCCCTGAAGAAGGTGCGCTTTGACAAATTTCAAGCCGAGGGCATTAGGTTCATGGCGAGAGAAATAATAATTCTCCGCACATTGGACCACCCAAACATCATGAAATTGGAGGGTATAATTACTTCACAACTATCAAATAGCATATACCTTGTATTTGAATACATGGAGCATGATCTTGCTGGCCTAGTGGCTTCTCCTGACATAAAGTTCACTGACCCACAGATTAAGTGTTACATGAGACAGCTATTAAGTGGAATTGAGCATTGTCACCTTCGAGGTATTATGCATCGAGACATTAAAGTATCTAATATATTAGTGAACAATGAAGGTATTCTCAAGATAGGAGACTTTGGATTAGCAAATACCCTTAGCCCAAATAGTAAGCAACCTTTAACAAGTCGTGTAGTTACTCTATGGTATCGTCCTCCCGAGCTCTTGATGGGATCAACAAATTATGGAGTTTCTGTGGATCTATGGAGTGTGGGCTGTGTATTTGCTGAACTTCTTCTAGAGAAGCCCATCCTTAAGGGGAGAACTGAGGTTGAACAATTACACAAAATTTTCAAGCTCTGCGGGTCTCCACCTGATGAGTTCTGGAAAAAGAGTAAGCTTCCTCTGGCAACGATGTTTAAGCCTCAGACGAATTATGGTAGCTCTCTCCGGGAGAGGTGTAGAGGTTTTCCTGTAACTACTGTAAACCTTCTTGAGACTTTACTTTCCATTGATCCCTCCAAGCGCGGGACTGCCTCCTCTGCACTCATGTCTGAGTATTTCAGCACCAAGCCATATGCTTGTAATCCATCCCTCCTGCCAAAGTATCCACCAAGCAAAGAAATGGATGCCAAAAATCGGGAAGATGTGCGCAGGAAAAAGAATGGAGGTAAAGTGAGAGAGGCTGTAACATCAAAAAGGCAAAGACGAGTCCACAAAGTTTCCCATGACCATATCAGTTTCAACAAACCAGCTTTGAAAGAGAATATTTCTCAAAATGCTGGTACAGATGATGGTAGGGTGCATGTTACAAAAGGAAAAGTAGGAGCTATGCATAAAGAGCAACCAAAGCCTTCATATGATGCAAAGTCAGAGGCTGTCCAAGTGGTGAATGGTTGCAATGGAAACAGTGTATACTCAGGACCAGCACCAGTTTCAGGATCTAGTGGCTTCACATGGGCTAAATGGAGAAAAGCGGAAGCTCCATCCATGTTGTCTGATGGCTCAAGAAGCAAAATCAGTGCTCTGGATCCAACCTTTGCAAAAGGCACATATGATTTAACCAAACATGGGATAGAAGTTTCAGAGAGGAAACATAGTTACAACACAAGCCATCAGGATGAGACTTCCAACTATGTATTGCAAAAGCACCAGGCTACTCGCGTTCAACAAAAATCATTCGATATAACTGATACATACAACTCAAATTATTACATGGAATTTGATTTCACACATAAAATGGATGCTTTGATAGACACTCAGGGCCACAGAAAACATGATGAGCCTGTGGAGCAATCAGTACCAAAAATGATCCCATCAAAGGAAAATGATGAGTTGTTGCATCGGAATGAAAATAGTATGCGGCAATCTCTTCATAAATCAAGGTTGGAAAGAGACAAATGA 2124 0.4529 MSHDRSRHPRKSSADLAQIEREIKKKGFVFLGARFRAGSTRRQMGCASSKKAVAGAGSTPAGPHVVRSSSRKQGNGSGRNGAAESREGERRSEEGKECRKGSLRGSVSLRFVEAEQIAAGWPPWLTSAAGEAIQGWVPLKTDSFERLDKIGQGTYSSVFQAREVETGRMVALKKVRFDKFQAEGIRFMAREIIILRTLDHPNIMKLEGIITSQLSNSIYLVFEYMEHDLAGLVASPDIKFTDPQIKCYMRQLLSGIEHCHLRGIMHRDIKVSNILVNNEGILKIGDFGLANTLSPNSKQPLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELLLEKPILKGRTEVEQLHKIFKLCGSPPDEFWKKSKLPLATMFKPQTNYGSSLRERCRGFPVTTVNLLETLLSIDPSKRGTASSALMSEYFSTKPYACNPSLLPKYPPSKEMDAKNREDVRRKKNGGKVREAVTSKRQRRVHKVSHDHISFNKPALKENISQNAGTDDGRVHVTKGKVGAMHKEQPKPSYDAKSEAVQVVNGCNGNSVYSGPAPVSGSSGFTWAKWRKAEAPSMLSDGSRSKISALDPTFAKGTYDLTKHGIEVSERKHSYNTSHQDETSNYVLQKHQATRVQQKSFDITDTYNSNYYMEFDFTHKMDALIDTQGHRKHDEPVEQSVPKMIPSKENDELLHRNENSMRQSLHKSRLERDK 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0417 707 MobiDBLite consensus disorder prediction 661 707 - -
Ssu3g0417 707 PANTHER CYCLIN-DEPENDENT KINASE 101 599 - -
Ssu3g0417 707 Pfam Protein kinase domain 144 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0417 707 ProSitePatterns Protein kinases ATP-binding region signature. 150 173 IPR017441 GO:0005524
Ssu3g0417 707 Gene3D Transferase(Phosphotransferase) domain 1 227 467 - -
Ssu3g0417 707 MobiDBLite consensus disorder prediction 442 464 - -
Ssu3g0417 707 Gene3D Phosphorylase Kinase; domain 1 131 226 - -
Ssu3g0417 707 CDD STKc_CDK9_like 144 428 - -
Ssu3g0417 707 ProSiteProfiles Protein kinase domain profile. 144 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0417 707 SMART serkin_6 144 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0417 707 PANTHER CELL DIVISION PROTEIN KINASE 101 599 - -
Ssu3g0417 707 MobiDBLite consensus disorder prediction 38 99 - -
Ssu3g0417 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Ssu3g0417 707 MobiDBLite consensus disorder prediction 83 99 - -
Ssu3g0417 707 MobiDBLite consensus disorder prediction 447 464 - -
Ssu3g0417 707 MobiDBLite consensus disorder prediction 681 707 - -
Ssu3g0417 707 SUPERFAMILY Protein kinase-like (PK-like) 138 433 IPR011009 -
Ssu3g0417 707 MobiDBLite consensus disorder prediction 63 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0417 Ssu-Chr3 9062303 9068307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0417 136 501 Core Cell Cycle Gene Families AT5G10270 44.703 2.49e-108 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Ssu3g0417 Pkinase 6.7e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0417 - - gmx:100781059 1124.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0417 3 9062303 9068307 Ssu3g0417 3 9062303 9068307 ECH
Ssu3g0417 3 9062303 9068307 Ssu8g2265 8 59176675 59178584 ECH