Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0416 ATGGCCTCCCCGATGGCCTTCTCCGCCGTCGCCGCCGACAACTCCGGCAAGGAAGAGGATGGGCCCCACAAGGGGTTCAAGCAGAGCAGGCCCATGAATTTGGTCATTGCTCGTTCCCCGTTCTTCACTGTGCCACCTGGTTTGAGCCCGTCTGGGTTTCTTAATTCCCCTGGCTTCTTTTCCCCTCAGAGCCCCTTTGGGATGTCCCACCAACAAGCTCTAGCACAGGTTACAGCTCAAGCTGTCTTAGCACAATCTCATATGCAAATGCAAGCTGATTACCAGCTTCCTGCAGTAACAGCTCCCACCGAACCACCTGTACAGCAGCCTTCTTTTGCTCTAAATGAAGCTTCAGAGCAGCAAGTAGTTTCATCTGTATCAGAAGCTAAAAATGCTCAACTGGAAACATCGGAGCTCTCACAGGCTGATAAGAAATATCAACCATCTTCCCTGGCCATTGACAAACCTGCAGATGATGGCTACAACTGGCGTAAGTATGGGCAGAAGCAGGTTAAGGGCAGTGAGTATCCACGAAGCTACTACAAGTGCACACATCTGAATTGCCTCGTGAAGAAAAAAGTTGAGCGTGCTCCTGATGGTCACATAACTGAAATTATCTATAAAGGCCAACATAACCATGAAAAGCCTCAGGCAAATAGGCGTGTCAAAGATAATAGTGATTCAAATGTCAATGCAACTGTTCAGCCTAAGTCTGAGTCAAACTCACAAAGTTGGGTTGGACAATTAAACAAGTTTAGTGAAAACGTTCCTGATTGTTCAGTTCCTGAAAGTGATCAGACCTCCAATCAAGGGGCTCCTTGGCAACTGCTACCTGGATCGAGTGAGAGCGAGGAAGTGGGTGATGCAGATAATCGGGAAGAGGCAGATGACAGCGAGCCAAACCCTAAGAGAAGGAACACTGATCTTGGGGTTTCTGAAGTACCTCCGTCTCAGAAGACTGTCACAGAACCCAAAATCATTGTGCAAACAAGAAGCGAAGTTGATCTTTTGGATGATGGATACAGGTGGCGAAAGTATGGTCAGAAAGTGGTGAAGGGAAATCCTCATCCAAGGAGTTATTACAAATGCACTAGCGCAGGATGCAATGTGCGCAAACATGTTGAGAGAGCTTCAACAGACCCCAAGGCTGTCATAACCACGTATGAGGGTAAACATAATCATGATGTGCCTGCTGCTAGAAACAGCAGTCACAACACAGCTAGTAGCAATTCAATGCCATTAAAACCGCATAACGTGGTGCCGGAGAAGCATCCTTTGCTCAAAGACATGGATTTTGCAAGTAATGACCAAAGACCTGTACATTTGCGCTTAAAAGAAGAGCAAATCATAGTATAG 1356 0.4683 MASPMAFSAVAADNSGKEEDGPHKGFKQSRPMNLVIARSPFFTVPPGLSPSGFLNSPGFFSPQSPFGMSHQQALAQVTAQAVLAQSHMQMQADYQLPAVTAPTEPPVQQPSFALNEASEQQVVSSVSEAKNAQLETSELSQADKKYQPSSLAIDKPADDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCLVKKKVERAPDGHITEIIYKGQHNHEKPQANRRVKDNSDSNVNATVQPKSESNSQSWVGQLNKFSENVPDCSVPESDQTSNQGAPWQLLPGSSESEEVGDADNREEADDSEPNPKRRNTDLGVSEVPPSQKTVTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHDVPAARNSSHNTASSNSMPLKPHNVVPEKHPLLKDMDFASNDQRPVHLRLKEEQIIV 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0416 451 MobiDBLite consensus disorder prediction 393 416 - -
Ssu3g0416 451 MobiDBLite consensus disorder prediction 1 30 - -
Ssu3g0416 451 MobiDBLite consensus disorder prediction 223 277 - -
Ssu3g0416 451 PANTHER WRKY PROTEIN 1 450 - -
Ssu3g0416 451 SUPERFAMILY WRKY DNA-binding domain 329 397 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu3g0416 451 SMART WRKY_cls 337 396 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu3g0416 451 SMART WRKY_cls 157 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu3g0416 451 SUPERFAMILY WRKY DNA-binding domain 156 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu3g0416 451 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 450 IPR044810 GO:0003700
Ssu3g0416 451 ProSiteProfiles WRKY domain profile. 152 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu3g0416 451 ProSiteProfiles WRKY domain profile. 332 397 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu3g0416 451 MobiDBLite consensus disorder prediction 208 222 - -
Ssu3g0416 451 MobiDBLite consensus disorder prediction 208 323 - -
Ssu3g0416 451 Gene3D WRKY domain 146 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu3g0416 451 Gene3D WRKY domain 322 398 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu3g0416 451 MobiDBLite consensus disorder prediction 399 415 - -
Ssu3g0416 451 Pfam WRKY DNA -binding domain 338 394 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu3g0416 451 Pfam WRKY DNA -binding domain 158 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu3g0416 451 MobiDBLite consensus disorder prediction 134 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0416 Ssu-Chr3 9052982 9058827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0416 26 449 WRKY Transcription Factor Family AT2G03340 54.691 3.40e-138 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu3g0416 WRKY 8.4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0416 - - gmx:100796679 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0416 3 9052982 9058827 Ssu3g0416 3 9052982 9058827 ECH