Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0409 ATGATCAATTACCTTACCAAGAATTTTATTCGTAACTTGGTATCTAAGCAACGAAGGAGAATGCTTATAGCTGGTTATGATCTTGACATGTCATATATCACAGATCGAGTATTAGCAATGTCATTTCCTGCTCAACGTATGCGAGCAATGTATCGAAATCCTCTCTGGCAGGTCAAGTCTGTGTTGGACATGAGACATTATGAGCATTATAAGATCTATAATCTCTGTATAGAAGAAAGTTATGATCCAGATAACTTCTATGGACGCGTGGAAGCATACCCCTTTGATGATAACCATGTGCCATCTCTTGAAATGGTCAAAGCTTTCTGTGAAAGTGTGGATTCATGGCTCTCATGTGACCCAAAAAACATTGCTGTTATTCATTGCATGGCAGGAAAAGGTAGAACTGGATTAATGGTATGTGCATACCTAACTTATTGCGGCATGTCAGCAGATGAGGCTCTTCAATTGTATGCAGATAGACGGACAACAAATAATGAAGGAGTATCAATACCAAGCCAACGTCGATACGTGGCATACTGGGAAAGTCTACTTTCTAATTCTGTACCTAGGGGAACTGGAAATGGACCACGAAGTGTGAACTTGCCTCAACCATGTAGCAGAGAATTGCGGCGAATCCGGCTTTATGATACagtcaacattgacacaatATTCTTTGTCATCTCAGAGCTACACGAGATTCCTAATGAGGTGTATCGCCCACCAGTGGAAGCTTACCGTAGCTGCTGTAGACAGATTAAGAAAGGGTATCAGAGAAACAACAGCCCTCGCTATTATATCTCTATTCTTGAAGGTGATAAAGATGGAAAGCAATCAGAAACAGAAGAACCTCGCATTGTAGTTCAAATGGACACAGAGAGTCCTGCCATATACCAAAAATCATGTTTGGACCATTATTTTGATAAACCTATACAAGTAACTGGAGATGTACGTGTCATATTCTATGAGAAAATGATAGGAGGTCGCCTTTTCTACTGCTGTTTTAATACAGCTTTTATTAGGAACAGCTTACTACAGCTCACAATACAAGAGTTGGACAAAGTTGGGAAGAAGGGGAGATCAATATCTGGCCCTGACTTCTGCCTAGAATTATTGTTTGGTCCTGCTAATACAGGATATTCATCGTCAAGTATATCCAATGATGAACATTCTAGTAATGattctttataa 1191 0.3913 MINYLTKNFIRNLVSKQRRRMLIAGYDLDMSYITDRVLAMSFPAQRMRAMYRNPLWQVKSVLDMRHYEHYKIYNLCIEESYDPDNFYGRVEAYPFDDNHVPSLEMVKAFCESVDSWLSCDPKNIAVIHCMAGKGRTGLMVCAYLTYCGMSADEALQLYADRRTTNNEGVSIPSQRRYVAYWESLLSNSVPRGTGNGPRSVNLPQPCSRELRRIRLYDTVNIDTIFFVISELHEIPNEVYRPPVEAYRSCCRQIKKGYQRNNSPRYYISILEGDKDGKQSETEEPRIVVQMDTESPAIYQKSCLDHYFDKPIQVTGDVRVIFYEKMIGGRLFYCCFNTAFIRNSLLQLTIQELDKVGKKGRSISGPDFCLELLFGPANTGYSSSSISNDEHSSNDSL 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0409 396 Pfam C2 domain of PTEN tumour-suppressor protein 264 373 IPR014020 -
Ssu3g0409 396 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 2 387 - -
Ssu3g0409 396 Pfam Tyrosine phosphatase family 116 160 IPR026893 GO:0004721
Ssu3g0409 396 CDD PTP_PTEN 29 184 IPR045101 GO:0016791
Ssu3g0409 396 Gene3D - 247 378 - -
Ssu3g0409 396 PANTHER BNAC03G16750D PROTEIN 2 387 - -
Ssu3g0409 396 ProSitePatterns Tyrosine specific protein phosphatases active site. 127 137 IPR016130 GO:0016311|GO:0016791
Ssu3g0409 396 ProSiteProfiles C2 tensin-type domain profile. 221 376 IPR014020 -
Ssu3g0409 396 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 280 375 IPR035892 -
Ssu3g0409 396 ProSiteProfiles Phosphatase tensin-type domain profile. 19 188 IPR029023 -
Ssu3g0409 396 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 107 162 IPR000387 GO:0016311|GO:0016791
Ssu3g0409 396 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 25 188 IPR029021 -
Ssu3g0409 396 Gene3D Protein tyrosine phosphatase superfamily 5 188 IPR029021 -
Ssu3g0409 396 SMART PTEN_C2_2 203 375 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0409 Ssu-Chr3 8969630 8973399 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0409 1 380 Protein tyrosine phosphatase (PTP) family AT5G39400 70.496 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0409 K01110 - gmx:100809938 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0409 3 8969630 8973399 Ssu3g0409 3 8969630 8973399 ECH