Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0408 ATGGACGGGGGGCTGGCGGCGATGGTGACGGTGGCGCGCACGTGCGTGGACGCCGTGCACCTCTTCCACCTGTGGCTGCAGTTCAGGCTGGCGTACGTGTCGCGAGAGTCGCTCGTGGTGGGGTGCGGGAAACTCGTGTGGGACGCGCGTGCCATCGCGTCGCATTACCTGCGATCCTTCAAGGGGTTCTGGTTCGACGCGTTCGTGATACTCCCCGTCCCCCAGGCTGTGTTTTGGTTAATAGTGCCAAAATTGATAAGAGAAGAGCGGATTAAAATCATTATGACCATaatgttattgatttttttgttccAATTTCTCCCCAAGGTTTACCATAGCATCTGCATGATGAGAAGCATGCAAAAAGTCACAGGCTACATCTTTGGCACCATTTGGTGGGGCTTTGGTCTCAATCTCATAGCTTATTTCATTGCTTCTCATGTTGCTGGAGGGTGCTGGTATGTCCTTGCGATTCAACGTGTTGCGTCATGCCTCCGGCAGCAGTGTGAAAGAACTAATGGATGCAACCTTCCTGTGTCATGCTCAGAGGAGGTATGCTACCAGTCTTTGTTACCAGCAGGCACAATAGGAAATTCATGTGGTGGAAACTCAACACTGGTAAGAAAGCCTTTGTGCTTAGATGTTGAAGGACCTTTCAAATATGGGATCTACCAATGGGCACTTCCAGTCATATCCAGCAACTCTTTGGCTGTCAAGATTCTTTACCCCATTTTTTGGGGTTTGATGACCCTCAGCACTTTCGGAAATGATCTTGAACCCACAAGTAACTGGCTAGAAGTGGTTTTCAGCATATGCATCGTACTCAGTGGACTACTGCTTTTCACATTATTGATTGGTAACATCCAGGTATTCTTACACGCAGTCATGgcaaagaagagaaagatgcAGCTGAGATGTCGTGACATGGAATGGTGGATGAGGAGGAGGCAGTTGCCATCCCGATTAAGACAAAGAGTTCGCCATTTTGAACGTCAGAGATGGGCTGCCATGGGAGGAGAAGATGAGATGGAAATGATCAAAGACTTGCCTGAGGGGCTGAGGAGGGATATCAAGCGCCATCTTTGCCTCGACCTCATTAGAAAGGTTCCTCTATTCCACAACTTGGATGATCTTATTCTTGACAACATCTGTGACAGGGTGAAGCCACTAGTCTTCTCTAAAGATGAAAAGATAATTAGGGAAGGTGATCCAGTACCAAGGATGGTGTTCATTGTCCGAGGACGCATAAAGCGCAACCAAAGTCTCAGCAAAGGCATGGTGGCCTCAAGCATCCTTGAGCCAGGAGGGTTTCTGGGGGACGAGCTACTTTCGTGGTGCCTTCGCCGGCCGTTCATCGACCGACTCCCAGCCTCCTCGGCCACGTTTGTGTGCCTTGAATCAGCAGAAGCCTTTGGCCTTGATGGTGATCACTTGAGGTACATCACTGATCACTTCCGGTACAAGTTTGCCAATGAGAGGCTGAAGAGAACAGCAAGATATTACTCATCCAATTGGAGAACCTGGGCTGCTGTCAACATTCAATTTGCTTGGAGACGTTACAGGCAGAGGACTAGAGGTCCAGTGACCCCTGTAAGGGACAATGGAGGCACTGAGCGCAGGCTCTTGCAGTATGCTGCAATGTTCATGTCAATAAGGCCACATGACCATCTTGAGTGA 1677 0.4842 MDGGLAAMVTVARTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDARAIASHYLRSFKGFWFDAFVILPVPQAVFWLIVPKLIREERIKIIMTIMLLIFLFQFLPKVYHSICMMRSMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCLRQQCERTNGCNLPVSCSEEVCYQSLLPAGTIGNSCGGNSTLVRKPLCLDVEGPFKYGIYQWALPVISSNSLAVKILYPIFWGLMTLSTFGNDLEPTSNWLEVVFSICIVLSGLLLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHFERQRWAAMGGEDEMEMIKDLPEGLRRDIKRHLCLDLIRKVPLFHNLDDLILDNICDRVKPLVFSKDEKIIREGDPVPRMVFIVRGRIKRNQSLSKGMVASSILEPGGFLGDELLSWCLRRPFIDRLPASSATFVCLESAEAFGLDGDHLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRQRTRGPVTPVRDNGGTERRLLQYAAMFMSIRPHDHLE 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0408 558 CDD CAP_ED 371 481 IPR000595 -
Ssu3g0408 558 Gene3D - 4 294 - -
Ssu3g0408 558 Gene3D Helix hairpin bin 297 362 - -
Ssu3g0408 558 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 558 - -
Ssu3g0408 558 Gene3D Jelly Rolls 369 487 IPR014710 -
Ssu3g0408 558 Pfam Ion transport protein 9 289 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Ssu3g0408 558 ProSiteProfiles cAMP/cGMP binding motif profile. 371 481 IPR000595 -
Ssu3g0408 558 SUPERFAMILY Voltage-gated potassium channels 2 292 - -
Ssu3g0408 558 SMART cnmp_10 371 497 IPR000595 -
Ssu3g0408 558 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 2-LIKE 1 558 - -
Ssu3g0408 558 SUPERFAMILY cAMP-binding domain-like 298 485 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0408 Ssu-Chr3 8962639 8967538 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0408 1 558 Ion Channels AT5G15410 80.106 0.0 899
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0408 K05391 - gmx:100798823 1069.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0408 3 8962639 8967538 Ssu3g0408 3 8962639 8967538 ECH