Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0396 ATGGAACACAGTAATTGGGCTGAATTGCTGCAAACCGAAACCCCACTCCCCTCTTACCCACAACCTGCATATCCTCCTCCACCATCTCACACTACCCATTACCCCTCTTACCCTCAAAACCCTAACCCCCCTTCCTCTCTCCCTCAACCTTCTGTTCCCCCCAACCCTCCTGGGGTTGATTCCCACCCCCCATTGAACCCTACTTCCTATGTGGGTCATGAATCCGTTCCCAATTTGACCTACCCTCAGAACCATGTTGTGGCTGATTCGAACTCGATGGTGGCATCTTCTGGGTACTACTTGGACCAGAGTTGGGCTGCTAGAGAGGCTGTTAGGCAATATGGTGCTGACCCTGCTATTTATACACCTGGCATCTCTATGACATCCAATGGCTCAGAACAATTGCCTATGGCAGATCCTAACTACACGTGGTGGACAGATACGACAACTCAACCTTATGACAATGGAGTGTGGAAGAAACACCCAAAGAAAGCTAAAACTAAGATTGTGCAATCTGCATATTGTGAAGTTTGCAAGATAGAATGCACCAGCAAGGAAGTACTGGACCAACATAAATTAGGAAAGAAGCACAAGAAGAACTTGGAGAAACTAAGTGAATCATTGACACCAACCCAAGTTCAACCATCTGGGTCATCTAATCCTGTGATAGGACCGCAATTACCGAACGACAAGAGCAAGTCCAGCAGGAATAAGAGCAAGAGGAAATCAGCTGAAACTACAGAGGAtttggagaaaaagaagaaaaaggttcTTGATGGTGGGGCAGCAGCTGAAGAAGTTAGGATATGTGCTATTTGTAATGTGGTGTGTAATAGTGAGACAGTTTATAACTTCCATCTTGCAGGACAAAAGCATGCAGCTGTGCTGAAGAAAGCATCTGACCATGCACAATCCAATGCCAGTTGA 927 0.452 MEHSNWAELLQTETPLPSYPQPAYPPPPSHTTHYPSYPQNPNPPSSLPQPSVPPNPPGVDSHPPLNPTSYVGHESVPNLTYPQNHVVADSNSMVASSGYYLDQSWAAREAVRQYGADPAIYTPGISMTSNGSEQLPMADPNYTWWTDTTTQPYDNGVWKKHPKKAKTKIVQSAYCEVCKIECTSKEVLDQHKLGKKHKKNLEKLSESLTPTQVQPSGSSNPVIGPQLPNDKSKSSRNKSKRKSAETTEDLEKKKKKVLDGGAAAEEVRICAICNVVCNSETVYNFHLAGQKHAAVLKKASDHAQSNAS 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0396 308 MobiDBLite consensus disorder prediction 205 258 - -
Ssu3g0396 308 Gene3D Classic Zinc Finger 158 204 - -
Ssu3g0396 308 Gene3D Classic Zinc Finger 229 300 - -
Ssu3g0396 308 Pfam Zinc-finger of C2H2 type 270 292 - -
Ssu3g0396 308 Pfam Zinc-finger of C2H2 type 174 197 - -
Ssu3g0396 308 MobiDBLite consensus disorder prediction 18 63 - -
Ssu3g0396 308 PANTHER ZINC FINGER RNA-BINDING PROTEIN 14 307 - -
Ssu3g0396 308 SUPERFAMILY beta-beta-alpha zinc fingers 166 204 IPR036236 -
Ssu3g0396 308 MobiDBLite consensus disorder prediction 239 258 - -
Ssu3g0396 308 MobiDBLite consensus disorder prediction 1 77 - -
Ssu3g0396 308 Coils Coil 236 256 - -
Ssu3g0396 308 SMART c2h2final6 268 292 IPR013087 -
Ssu3g0396 308 SMART c2h2final6 173 197 IPR013087 -
Ssu3g0396 308 MobiDBLite consensus disorder prediction 205 232 - -
Ssu3g0396 308 PANTHER - 14 307 - -
Ssu3g0396 308 SMART ZnF_U1_5 265 299 IPR003604 GO:0003676|GO:0008270
Ssu3g0396 308 SMART ZnF_U1_5 170 204 IPR003604 GO:0003676|GO:0008270
Ssu3g0396 308 MobiDBLite consensus disorder prediction 1 17 - -
Ssu3g0396 308 SUPERFAMILY beta-beta-alpha zinc fingers 265 298 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0396 Ssu-Chr3 8752026 8754869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0396 157 303 C2H2 Transcription Factor Family AT5G61190 29.762 3.06e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0396 - - gmx:100814580 355.525