Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0392 atgGTTCTCTTTGTACCAGTCTTGTCAGATGGCCTTGACAGCCGTAAATGGCATCATGCCCATGCAACCTTCTATGGTGACATGCAAGGTGGAGCCACCATGCAGGGTGCTTGTGGTTATGGTGATCTCTTCCAGCAAGGGTATGGGCTTGCAACCGCAGCACTAAGCACTGTTCTATTCAACAATGGCCTCACTTGTGGTGCATGTTTTGAGATCAGGTGCGTGAAGGACCCCCAATGGTGCATTTTAGGCGCGGGCACAATCAAAGTGACCGCAACAAATTTTTGTCCTCCCAATTACACCCCGCCTAATTTTGACCATTGGTGCAACCCTCCACAAAAGCACTTTGACTTGTCCATGAAAATGTTCACCACAATTGCCATGTACAAAGCCGGGATCATCCCAGTTGAATATCGCCGTGTCCCATGCACCAGGTATGGGGGTCTCAAGTTTGAGATGAGAGGGAACCCTTACTGGCTCCTAGTTTTGGTGTACAACGTTGGCAAGGCTGGTGATGTTACTCAAGTGAGCATCAAGGGGTCTGACCCTGGCTGGCTCCCCATGGCACGCGTCTGGGGACAAAATTGGGTCACTGGCTCTAATTTGGTGGGACAAGCCTTGTCATTTCGGGTCACTACTAGTGATGGCAAGAGGTTGGAGTTCGACAACGTTGTCCCTTCCTATTGGCAATTCGGACAGACCTACGAGGCCGGGGGCAACAAAAATTTTTAG 732 0.5014 MVLFVPVLSDGLDSRKWHHAHATFYGDMQGGATMQGACGYGDLFQQGYGLATAALSTVLFNNGLTCGACFEIRCVKDPQWCILGAGTIKVTATNFCPPNYTPPNFDHWCNPPQKHFDLSMKMFTTIAMYKAGIIPVEYRRVPCTRYGGLKFEMRGNPYWLLVLVYNVGKAGDVTQVSIKGSDPGWLPMARVWGQNWVTGSNLVGQALSFRVTTSDGKRLEFDNVVPSYWQFGQTYEAGGNKNF 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0392 243 PRINTS Expansin signature 47 61 IPR002963 GO:0009664
Ssu3g0392 243 PRINTS Expansin signature 88 98 IPR002963 GO:0009664
Ssu3g0392 243 PRINTS Expansin signature 147 159 IPR002963 GO:0009664
Ssu3g0392 243 PRINTS Expansin signature 223 239 IPR002963 GO:0009664
Ssu3g0392 243 PRINTS Expansin signature 159 180 IPR002963 GO:0009664
Ssu3g0392 243 PRINTS Expansin signature 194 215 IPR002963 GO:0009664
Ssu3g0392 243 PRINTS Expansin signature 74 85 IPR002963 GO:0009664
Ssu3g0392 243 PRINTS Expansin signature 123 136 IPR002963 GO:0009664
Ssu3g0392 243 PRINTS Expansin signature 106 123 IPR002963 GO:0009664
Ssu3g0392 243 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576
Ssu3g0392 243 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576
Ssu3g0392 243 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Ssu3g0392 243 PRINTS Expansin/Lol pI family signature 223 237 IPR007118 GO:0005576
Ssu3g0392 243 PRINTS Expansin/Lol pI family signature 16 31 IPR007118 GO:0005576
Ssu3g0392 243 PRINTS Expansin/Lol pI family signature 34 52 IPR007118 GO:0005576
Ssu3g0392 243 PANTHER EXPANSIN-A15 14 237 IPR002963 GO:0009664
Ssu3g0392 243 SUPERFAMILY PHL pollen allergen 146 236 IPR036749 -
Ssu3g0392 243 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 35 148 IPR007112 -
Ssu3g0392 243 Gene3D - 148 241 IPR036749 -
Ssu3g0392 243 SUPERFAMILY Barwin-like endoglucanases 10 166 IPR036908 -
Ssu3g0392 243 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 237 IPR007117 -
Ssu3g0392 243 Gene3D - 9 144 IPR036908 -
Ssu3g0392 243 Pfam Expansin C-terminal domain 150 226 IPR007117 -
Ssu3g0392 243 SMART dpbb_1 52 138 IPR007112 -
Ssu3g0392 243 Pfam Lytic transglycolase 52 138 IPR009009 -
Ssu3g0392 243 PANTHER EXPANSIN-A21-RELATED 14 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0392 Ssu-Chr3 8713843 8714933 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0392 9 243 Expansin Gene Family AT5G39300 62.979 6.53e-109 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0392 - - gmx:100789595 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0392 3 8713843 8714933 Ssu3g0392 3 8713843 8714933 ECH