Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0390 ATGAACATTGATGATTCGAACCAAGTGGCGAAATTGGCAGAACCTTTCAATAAAGTTGCCTCAGGAATCATATCAATGCCCATTGACTTGCCCGGAACATCGTTCAACCGAGCAATCAAGGCTTCCAAGTTTATTAAGGAGGAGCTGTTGAAGATTATCAAGCAGAGGAAGGTGGATTTAGCTAATGGAATGGCCACACAAACACAAGACATCCTGTCTCACATGTTATCGTCTTGCGATGAGAAAGGACAATATTATACTGAACATGATATAGCTGACAAGATTCTTGGCATTTTGATAGGCGGCCACGACACTGCAAGTTCTGTATGCACTTTCGTTGTCAAATACCTTGCTGACCTCCctctaaatatatatcaaaatgtctATCAAGAACAAATGGAGATTGCAAAATCAAAAGCTTCAGGAGAGTTGTTGAATTGGCATGACattaagaagatgaaatattCTTGGAATGTAGCTTGTGAAGTAATGAGACTTGCCCCTCCACTCCAAGGAGCTTTTAGGGAAGCCGTCAATGATTTTATCTTCAATGGATTCTCAATTCCAAAAGGCTGGAAGTTGTGTTGGAGTACAAGTTCAACACATAAGAATCCAGAGTGCTTTCAAGAGCCAGAGAAATTCGATCCGAGTAGATTTGAAGGAAATGGGCCGGCTCCTTATACTTTTGTGCCATTTGGTAGAGGGCCAAGGATGTGCCCCGGAAAAGAGTATGTGCGAATGGAAATATTGGTTTTCATGCACAACTTAGTGAAGAGGTTCAAGTAG 786 0.402 MNIDDSNQVAKLAEPFNKVASGIISMPIDLPGTSFNRAIKASKFIKEELLKIIKQRKVDLANGMATQTQDILSHMLSSCDEKGQYYTEHDIADKILGILIGGHDTASSVCTFVVKYLADLPLNIYQNVYQEQMEIAKSKASGELLNWHDIKKMKYSWNVACEVMRLAPPLQGAFREAVNDFIFNGFSIPKGWKLCWSTSSTHKNPECFQEPEKFDPSRFEGNGPAPYTFVPFGRGPRMCPGKEYVRMEILVFMHNLVKRFK 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0390 261 PRINTS P450 superfamily signature 101 118 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g0390 261 PRINTS P450 superfamily signature 158 169 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g0390 261 PRINTS P450 superfamily signature 230 239 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g0390 261 PRINTS P450 superfamily signature 239 250 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g0390 261 PANTHER BETA-AMYRIN 28-OXIDASE-LIKE 2 260 - -
Ssu3g0390 261 PANTHER CYTOCHROME P450 26 2 260 - -
Ssu3g0390 261 SUPERFAMILY Cytochrome P450 21 261 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g0390 261 Pfam Cytochrome P450 30 261 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g0390 261 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 232 241 IPR017972 GO:0005506|GO:0016705
Ssu3g0390 261 PRINTS E-class P450 group I signature 90 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g0390 261 PRINTS E-class P450 group I signature 229 239 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g0390 261 PRINTS E-class P450 group I signature 239 261 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g0390 261 PRINTS E-class P450 group I signature 197 221 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g0390 261 Gene3D Cytochrome P450 2 261 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0390 Ssu-Chr3 8660344 8666251 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0390 1 194 Cytochrome P450 AT5G36110 58.247 9.11e-71 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0390 K20667 - gmx:100815640 433.335