Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0379 ATGGcgttcttaaataaaattggaaatCTACTCAAGAATTCTGCTGTCAAGCACATCAATCAAGATTTTTCTGTGTCTACTCCTTCAGTTTTCCAAGCAATTAGATCCATGTCATCTGCAAAGCTTTTTGTCGGAGGTATTTCTTTCAGCACTGATGATATGAGTCTGCGAGAGGCTTTTGCTCGCTATGGAGAAGTAATTGATGCTAAGGTTATTATGGATCGCGAAACTGGCAGGTCAAGAGGTTTTGCCTTCATAACTTATGCAACAAGTGAGGATGCATCTTCTGCCATTCAGGGCATGGATGGCCAGGATCTTCATGGTCGGACGATACGTGTGAATTATGCAACAGAAAGGTCACGTCCAGggtttggtggtggtggaggtggctATGGCGGCGGCGGCTATGGCGGTGGGAGTGGTGGCTATGGTGGAGGCAGCGGCAGCGGTGGATATGGTGGAGGCAGCTATGGGCTAGAGGCGGCTATGGTGGTGGTAATTATGGAGGTAATGACAATAGGGGTGGAAGCTATGGAAGTGGTGGTTATGGTGTTACAAGCAGCTATGGCGGTGGCAATACTGAAACTAGTTACACCGGTGGTGCTGATGCTAGTAATTACCAATTCAATGAAAATTCTGGTGGAGATCTTGGCTCAGCTAGGGGCGAACTTGGTAGCAACCATAATGACGGAACAGGCGCAGACAATGATGAATTCATTGAGCCACTTGAAGACAATGTGA 741 0.444 MAFLNKIGNLLKNSAVKHINQDFSVSTPSVFQAIRSMSSAKLFVGGISFSTDDMSLREAFARYGEVIDAKVIMDRETGRSRGFAFITYATSEDASSAIQGMDGQDLHGRTIRVNYATERSRPGFGGGGGGYGGGGYGGGSGGYGGGSGSGGYGGGSYGLEAAMVVVIMEVMTIGVEAMEVVVMVLQAAMAVAILKLVTPVVLMLVITNSMKILVEILAQLGANLVATIMTEQAQTMMNSLSHLKTM 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0379 246 SMART rrm1_1 41 114 IPR000504 GO:0003723
Ssu3g0379 246 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 159 - -
Ssu3g0379 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Ssu3g0379 246 Gene3D - 25 156 IPR012677 -
Ssu3g0379 246 SUPERFAMILY RNA-binding domain, RBD 24 149 IPR035979 GO:0003676
Ssu3g0379 246 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 159 - -
Ssu3g0379 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0379 Ssu-Chr3 8265882 8267873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0379 28 120 Eukaryotic Initiation Factors Gene Family AT1G49760 29.592 3.29e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0379 K12741 - gmx:100818300 231.491