Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0378 ATGGCTGTAGAGGAGTCTGAGCCTGTGATTGGGGAGCTAGAAAGGGAGGAGAACTTGATTGCTGCAGTAAGGCATATTGTGAAGGCATTAGGGCCAAATAAGACCCTTACTAGTGATGCCAAGAAAATTCTGGCAGATCTTGGCACTAGGTTGTCCTCCATGTCCTCACCTAGTGAGAAGGAAGAGGGGAAACAAAGGGGGGATGATGGTGATGatcatgatggtggtggtgatgatgatgaagaggaGGGTGTTAGTGCCATTGAAGAAAGGCTCAATGTGATTCaggagaaaataatgaaatgggAGGAGGATCAGTCCATGATTTGGGATTTGGGACCTGAGGAAGCATCTGAGTATCTGAATGCTGCTAACGAAGCCCGCCGGTTGATTGAGAAGTTGGAAAGTTTGCATTTGAAGAAAGAGGATCAAGAGTATAAGTTTATGCAGAGGGCTTGTAGTGTTCTTCAAACAGCTATGGCGCGGCTTGAAGAAGAATTCAGGAACTTGCTTATCCAGAACAGGCAACCTTTTGAGCCAGAATACGTCTCTTTTCGATCCAGCGAAGAAGATCCTGTTGATGAGAACTCTATAGTCTCTATAGGTGATGAATCAGTTGAGGAGTCCCTTCAAAGAGATAGTGTCAGCAGAGCCCCCGAGGAGCATATCATTGATTTGGTTCATCCAGCCGTGATCCCGGATCTCAGGTGTATTGCAAACTTACTTTTTGCTTCAAATTATGCCCAGGAATGTTCCAATGCTTATATCATTGTCCGGAGGGATGCCTTAGATGAGTGCCTCTTCATTCTTGAAATGGAAAGGCTCAGCATCGAGGATGTCCTGAAAATGGAGTGGGGTACTTtgaattcaaaaatcaaaaggtGGATTTGGGCTGTGAAAATCTTTGTTAGGGTGTATCTTGCAAGTGAGAGGTGGCTTAGTGACCAGATTTTTGGGGAGGGTGAGCCTGTTAGTCTAGCTTGTTTTGTGGATGCATCCAAGGCTTCGATATTGCAGCTTCTGAATTTTGGTGAAGCCATGTCCATCGGCCCTCACCAACCCGAGAAATTGTTCCGCGTTCTTGACATGTATGAGGTTCTAGCAGACCTTATGCCCGACATCAATGCCCTGTATTCAGATGAGGTTGGTTCCTCGGTCAAGGTTGAATGTCATGAGGTTCTGAAGAGATTAGGCAACTGCGTGAGGGCAACATttcttgaatttgaaaatgccaTTGCAACCAATGTATCATCAACCCCTTTTGTAGGCGGTGGGATACACCCTTTAGCCAGATATGTCATGAATTATCTTAGAACCCTTACCGACTACAGTGACATACTTAATCTGCTTCTGAAGGACCAAGAAGACGAGGATGCTGCGATTTCGCTGTCACCCGACATGAGCCCTGGCACGGAAGAAGACAGCAGAAGCCAGGGATCTCCGAGTAGAGTTTCCTCAATGGCCCTCCACTTCCGATCAATCGCTTCAATCTTGGAAAGCAACCTTGAGGAGAAGTGCAAGTTATACAAGGAGGTCTCCTTGCAGCACTTGTTCTTAATGAACAACCTACACTACATGGCTGAAAAGGTTAAGGGGTCTGAACTCAGGCTCATACACGGAGACGAATGGATTCGAAAGCACAACTGGAAGTTTCAGCAGCACGCAATGAAGTATGAGAGAGCCAGTTGGAGTTCCATTCTCAACTTGCTTAAGGATGAAGGGATTCATGTTCCGGGTACGAATTCCGTCTCAAAAAGTCTTCTTAACGAGAAGCTACGAAGCTTCTACCTTGGTTTTGAGGATGTTTACAGGATCCAGACGGCTTGGCTTATCCCAGATATTCAGCTTCGTGAGGATTTGCGGATTTCTATATCCCTCAAAGTAATCCAAGCTTATAGGACATTTGTTGGAAGGCATAATAGTCACATAAGTGACAGACACATCAAGTACACCGCTGATGATCTAGAAAAATACCTTTTGGATTTCTTTGAAGGATCTCCAAAGTGGTTGCAAAATCCTCATAGGAGGTGA 2031 0.4353 MAVEESEPVIGELEREENLIAAVRHIVKALGPNKTLTSDAKKILADLGTRLSSMSSPSEKEEGKQRGDDGDDHDGGGDDDEEEGVSAIEERLNVIQEKIMKWEEDQSMIWDLGPEEASEYLNAANEARRLIEKLESLHLKKEDQEYKFMQRACSVLQTAMARLEEEFRNLLIQNRQPFEPEYVSFRSSEEDPVDENSIVSIGDESVEESLQRDSVSRAPEEHIIDLVHPAVIPDLRCIANLLFASNYAQECSNAYIIVRRDALDECLFILEMERLSIEDVLKMEWGTLNSKIKRWIWAVKIFVRVYLASERWLSDQIFGEGEPVSLACFVDASKASILQLLNFGEAMSIGPHQPEKLFRVLDMYEVLADLMPDINALYSDEVGSSVKVECHEVLKRLGNCVRATFLEFENAIATNVSSTPFVGGGIHPLARYVMNYLRTLTDYSDILNLLLKDQEDEDAAISLSPDMSPGTEEDSRSQGSPSRVSSMALHFRSIASILESNLEEKCKLYKEVSLQHLFLMNNLHYMAEKVKGSELRLIHGDEWIRKHNWKFQQHAMKYERASWSSILNLLKDEGIHVPGTNSVSKSLLNEKLRSFYLGFEDVYRIQTAWLIPDIQLREDLRISISLKVIQAYRTFVGRHNSHISDRHIKYTADDLEKYLLDFFEGSPKWLQNPHRR 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0378 676 MobiDBLite consensus disorder prediction 48 85 - -
Ssu3g0378 676 Coils Coil 85 105 - -
Ssu3g0378 676 Coils Coil 117 144 - -
Ssu3g0378 676 MobiDBLite consensus disorder prediction 468 483 - -
Ssu3g0378 676 Pfam Exo70 exocyst complex subunit 293 660 IPR046364 GO:0000145|GO:0005546|GO:0006887
Ssu3g0378 676 PANTHER EXOCYST COMPLEX PROTEIN EXO70 22 670 IPR004140 GO:0000145|GO:0006887
Ssu3g0378 676 Coils Coil 146 173 - -
Ssu3g0378 676 MobiDBLite consensus disorder prediction 461 483 - -
Ssu3g0378 676 MobiDBLite consensus disorder prediction 57 72 - -
Ssu3g0378 676 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 22 670 - -
Ssu3g0378 676 Gene3D Exocyst complex component Exo70 100 671 - -
Ssu3g0378 676 SUPERFAMILY Cullin repeat-like 105 664 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0378 Ssu-Chr3 8243245 8245275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0378 12 676 EXO70 exocyst subunit family AT3G29400 49.188 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0378 K07195 - gmx:100799102 1219.53