Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0377 ATGGGGCAAAGACAGATCTTTGGTCATGTGGTGAGTTTGTTGCTTATGGTCCTAGTTGGAGCCAGTTGTGCTAAAGCAGAAGAAGGAGGGGATGCAGCTGATAGGATTTTGGAACTCCCTGGGCAGCCCAAGGTCTCATTTCAGCAGTTCTCTGGCTATGTTACTGTCAACAAGGTTGCTGGTAGAGCTCTCTTTTACTGGCTCACTGAAGCTGCCCAAAATCCTCTCACCAAACCTTTGGTCATTTGGCTTAATGGAGGTCCAGGTTGTTCATCAGTGGCATATGGAGCATCTGAAGAGATTGGCccatttagaataaataaaacagCTTCTGGGCTATACATTAACAAGTTCTCATGGAACACAGTGGCCAACCTCTTGTTCTTGGAAGCTCCGGCCGGTGTTGGCTTCTCCTACACCAACCGCTCTTCCGACCTCTTCGACACCGGCGACCGCCGCACCGCCCAAGACTCTCTGGAATTTGTTATCCAATGGCTAGAACGATTCCCGCGTTACAAAAATCGGGAACTTTATATCACTGGAGAGAGCTATGCAGGCCATTATGTTCCTCAGTTAGCCAAGGAAATCATGACATATAACGCAAAAACCAAGCACCCCATCAATCTCAAAGGAATAATGGTAGGAAATGCAGTGACAGACAACTACTATGATAACTTGGGCACAGTGACGTACTGGTGGAGCCATGCTATGATCTCCGACCAGACTTACCGGCAACTCATGAGTACGTGTGATTTTCACCGGCAGAAGGAATCTGATGAGTGTGAGTCTGTATATAGCTATGCCATGGATCAAGAATTTGGTAACATTGATCAGTACAACATCTATGCTCCTCCTTGCAACAACTCAGATGGTAGCTCTGCCACCCGCCGCACCATGCGGTTACCTCACCTTCCCCATCtgGCTTTTAGGCAATGGTCTGGTTATGATCCATGTACGGAAAAGTATGCAGAGATTTACTACAACAGGCCTGATGTTCAGAAAGCACTTCATGCTAACACAACCGGCATTCCTTATAAGTGGACTGCTTGCAGTGAGGTTTTGAATCGGAACTGGAATGACACAGATGTATCGGTTCTTCCAATTTATAGACAGTTGATAGCTCACGGGATAAGACTATGGGTGTTCAGTGGGGACGTGGACTCGGTGGTGCCTGTCACAGCAACAAGATATGCCCTTGCACAGCTTAAGTTATCAACTAAAATACCATGGTATCCTTGGTATGTCAAAAATCAGGTTGGAGGGTGGACAGAGGTGTACGAAGGGGTAACATTTGCGACTGTGAGAGGAGCAGGGCATGAAGTGCCGCTATTCAAGCCAAGAGCAGCGCTTCAGTTATTCACATCATTCCTTGCAGGAAAGCCTCCTCCGAAGTCCTAA 1398 0.4671 MGQRQIFGHVVSLLLMVLVGASCAKAEEGGDAADRILELPGQPKVSFQQFSGYVTVNKVAGRALFYWLTEAAQNPLTKPLVIWLNGGPGCSSVAYGASEEIGPFRINKTASGLYINKFSWNTVANLLFLEAPAGVGFSYTNRSSDLFDTGDRRTAQDSLEFVIQWLERFPRYKNRELYITGESYAGHYVPQLAKEIMTYNAKTKHPINLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDQTYRQLMSTCDFHRQKESDECESVYSYAMDQEFGNIDQYNIYAPPCNNSDGSSATRRTMRLPHLPHLAFRQWSGYDPCTEKYAEIYYNRPDVQKALHANTTGIPYKWTACSEVLNRNWNDTDVSVLPIYRQLIAHGIRLWVFSGDVDSVVPVTATRYALAQLKLSTKIPWYPWYVKNQVGGWTEVYEGVTFATVRGAGHEVPLFKPRAALQLFTSFLAGKPPPKS 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0377 465 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 10 464 IPR001563 GO:0004185|GO:0006508
Ssu3g0377 465 ProSitePatterns Serine carboxypeptidases, serine active site. 179 186 IPR018202 GO:0004185
Ssu3g0377 465 Pfam Serine carboxypeptidase 41 458 IPR001563 GO:0004185|GO:0006508
Ssu3g0377 465 Gene3D alpha/beta hydrolase 30 288 IPR029058 -
Ssu3g0377 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 128 IPR001563 GO:0004185|GO:0006508
Ssu3g0377 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 429 442 IPR001563 GO:0004185|GO:0006508
Ssu3g0377 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 129 139 IPR001563 GO:0004185|GO:0006508
Ssu3g0377 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 190 IPR001563 GO:0004185|GO:0006508
Ssu3g0377 465 SUPERFAMILY alpha/beta-Hydrolases 32 462 IPR029058 -
Ssu3g0377 465 Gene3D - 318 355 - -
Ssu3g0377 465 Gene3D - 365 459 - -
Ssu3g0377 465 ProSitePatterns Serine carboxypeptidases, histidine active site. 429 446 IPR033124 GO:0004185
Ssu3g0377 465 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Ssu3g0377 465 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 25 10 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0377 Ssu-Chr3 8223607 8229867 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0377 323 461 Calmodulin-binding Proteins AT2G22960 30.714 3.42e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0377 K16297 - gmx:100807680 914.45