Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0375 ATGGAGTCATTGCCAATAGCACGCGACAGGCTGGGGAAGGGGTTGGTTTACGCAATTCTTGTTGGAGAAAACAAGTTGGCGGGACCCtttcctactaatttatttgagaaatgTGACGGATTAAACTCATTGCTTTTAAATGTGAGTTATACTGTGTTATCCGGTCAGATTCCTTCCAATTTTGGTGGAATGTGCAGATCATTGAAATTCTTGGATGCATCTGGTAATCAGATTACAGGGACAATCCCAGTTGGTTTGGGGGATATGTTGAAGGATCTGAAGTTTCTCTCTTTGGCTGGTAATAACTTAAGTGGCTCCATCCCTACCAGCCTTGGGCAGTTGTACTCTTTAGAAGTCCTGGACCTTTCTTCAAATTCTCTTACTGGTGAAATTCCAAAAGGTATTGAGAACTTGAGAAATCTGACTGATGTTTTGCTCAACAATAACAAACTTTCTGGACGGATTCCTGCTGGTTTGGCAAATGTCAGTACACTGTCAGCATTTAATGTGTCATTCAATAACTTATCTGGATCCTTGCCTTCAAATAGTAACTCAATAAAATGCAGCAGTGCTGTTGGGAATCCATTTTTACGTGCTTGCAATGAAGTTTCTCTTACTGTGCCAACAGCAGACCAAGGGCTGGTTGGTAATTCTAGTTCCTATACTGCTGCACCACCAGAAGTTACAGGCAAAATGGGTGGGAATGGTTTCAATTCTATTGAAATAGCATCTATAACTTCTGCATCAGCCATTGTTTCTGTTCTTCTAGCCCTAATCATCCTTTTCATTTATACACGGAAGTGGAATCCTAAGTCCAGGGTTGTTGGGTCTACGAGAAAAGAAGTTACAGTGTTTACTGATATTGGGGTTCCATTGACATTTGAAAATGTTGTCCGTGCCACAGGGAATTTCAATGCTAGCAATTGCATTGGGAATGGGGGATTTGGGGCAAcctataaggcagagatatcaTCAGGAAACTTAGTGGCAATAAAACGTCTGGCAGTTGGACGATTCCAAGGTGTTCAACAATTCCATGCAGAGATCAAGACTCTTGGAAGGCTTCGTCATCCAAATCTTGTCACTCTGATTGGTTATCATGCCAGTGAGACAGAGATGTTTCTCATATACAACTATTTGCCGGGTGGTAATctggaaaagtttatccaagAGAGGTCCACAAGGGCTGCGGATTGGAGGATTCTTCACAAGATTGCATTGGATATAGCCCGTGCACTTGCATACCTGCATGATCAGTGTGTACCGCGTGTTCTTCATCGTGATGTCAAGCCCAGTAACATCTTGCTAGATGATGATTGTAATGCTTATCTATCCGACTTTGGATTGGCTAGACTTCTGGGAACCTCAGAAACTCATGCTACCACTGGGGTGGCAGGAACGTTTGGCTATGTTGCTCCTGAATATGCCATGACTTGTCGTGTTTCCGACAAGGCTGATGTGTATAGCTACGGTGTGGTGCTTCTAGAGTTGCTCTCTGACAAGAAGGCATTGGatccttcattttcttcataCGGGAATGGTTTCAACATAGTAGCATGGGCATGCATGCTACTGCGGCAAGGCCAGGCAAAAGAGTTCTTCGCTGCCGGCTTATGGGATGCAGGACCTGCAGATGATTTGGTAGAGGTCCTACACTTAGCTGTTGTGTGTACGGTTGATTCTCTCTCAACCAGACCTTCAATGAAACATGTTGTACGGCAGCTTAAGCAACTTCAACCGCCATCGTGCTAG 1752 0.4218 MESLPIARDRLGKGLVYAILVGENKLAGPFPTNLFEKCDGLNSLLLNVSYTVLSGQIPSNFGGMCRSLKFLDASGNQITGTIPVGLGDMLKDLKFLSLAGNNLSGSIPTSLGQLYSLEVLDLSSNSLTGEIPKGIENLRNLTDVLLNNNKLSGRIPAGLANVSTLSAFNVSFNNLSGSLPSNSNSIKCSSAVGNPFLRACNEVSLTVPTADQGLVGNSSSYTAAPPEVTGKMGGNGFNSIEIASITSASAIVSVLLALIILFIYTRKWNPKSRVVGSTRKEVTVFTDIGVPLTFENVVRATGNFNASNCIGNGGFGATYKAEISSGNLVAIKRLAVGRFQGVQQFHAEIKTLGRLRHPNLVTLIGYHASETEMFLIYNYLPGGNLEKFIQERSTRAADWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDCNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWACMLLRQGQAKEFFAAGLWDAGPADDLVEVLHLAVVCTVDSLSTRPSMKHVVRQLKQLQPPSC 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0375 583 Gene3D Transferase(Phosphotransferase) domain 1 380 580 - -
Ssu3g0375 583 Pfam Protein kinase domain 307 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0375 583 SUPERFAMILY L domain-like 21 201 - -
Ssu3g0375 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672|GO:0006468
Ssu3g0375 583 ProSiteProfiles Protein kinase domain profile. 304 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0375 583 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Ssu3g0375 583 Pfam Leucine Rich Repeat 116 138 IPR001611 GO:0005515
Ssu3g0375 583 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 2 582 - -
Ssu3g0375 583 PRINTS Leucine-rich repeat signature 114 127 - -
Ssu3g0375 583 PRINTS Leucine-rich repeat signature 68 81 - -
Ssu3g0375 583 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 2 582 - -
Ssu3g0375 583 SMART serkin_6 304 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0375 583 Gene3D Ribonuclease Inhibitor 13 207 IPR032675 -
Ssu3g0375 583 SUPERFAMILY Protein kinase-like (PK-like) 286 575 IPR011009 -
Ssu3g0375 583 Gene3D Phosphorylase Kinase; domain 1 267 379 - -
Ssu3g0375 583 CDD STKc_IRAK 310 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0375 Ssu-Chr3 8185840 8187661 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0375 1 583 Receptor kinase-like Gene Family AT3G02130 70.915 0.0 814
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Ssu3g0375 Pkinase 9.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0375 - - gmx:100803058 1068.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0375 3 8185840 8187661 Ssu3g0375 3 8185840 8187661 ECH