Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0366 ATGGCTTCTTCCAACAACTCCATCAAAATCCATGAGCACTGCCTCGTTGCTCCACCCTCGGCAACTGCAACCCACTTTTCTCTCCCTCTAACCTTCTTTGACCTTATTTGGCTAAGGTTTCATCCAGTTGAGCGCATCTTCTTCTACGCCCTTTCCCTGCCTCACTCCgacccttcttttttctttgaaaaagtgGTTCCAAAGCTCAAAGCCTCACTCTCTCAGACCCTCCAACGCTTTCTTCCTTTAGCCGGCAACGTCGTTTGGCCTTCTGATTCACACGAACCCTTCATCCAATTCAACCCTGGCGATGGGGTCTCCTTGGTCCTAGCACAGTGTGATGACGATGCAGAATTCAATCACTTCTTGGACAATTCACCCCGTGAAGCCACAAAATCTCGCACTTTGGTACCCCACTTGGAATCATCAGATTCTGCTGCCTCAGTTATCTCCCTGCAGATAACGCTGTTTCCAAACAAGGGCTTTTGCATAGGCATCAGCACTCACCATGCCGTTCTTGATGGAAAATCTTCAACCGTCTTCGTCAAGGCTTGGGCTTATGCGTGTAGATCCGGTGAAGAAGAATCCCCACCATCTTTGGTGCCGGAGTTAGAGCCTTTCTTTGATAGGGACCTCATCAAAGATCCCACTGGTCTTGAAAGTGTGTTCATAAATAACTGGTCACAAATCTTGTCTAAAATGGACCCTTCTGACACCAGCCACGGGCGAAGCCTAAATATTATGTCACTACCAATCAAGGATCACTCAGTTCGAGCCACGTTCGAGCTCAAACGTGGAGATTTGGAAAAGATAAGGAAAAGGGTGTTGTCCAAGTGGGAATTAGTGGACGAAGCAAAACCAAATTTTGCTTCTTCAAAGCCAACTACTTTGTCCACCTTCGTCACTTCCCGTGCTTACGTGTCTGTCTGCATTGCTAAAGCCCTTCATGAACCCCAAAATATACAGAAATTCGCTCTTGGGCTCACTGTTGATTGCAGGGCCCGGTTAGAGCCTCCGATCCCTGAGAACTACTTTGGCAATTGTGTGGCTTCTCATATTGTAGATACACAGCCAGAGGACTTCATAAAAGAAGATGGGGTGGTTGTTGTTGCTAAGAGGATTTggagtaaaattaaaatgttggaTAAGGGAGCTCTTGATGGAGTAGAGACAGTTTTCTCTAGGTTTCTCGTTATGTTAAGTGAGGGAGTTAAGGGAATGGGAGTTGCGGGGTCCAATCGATTTGGTGTTTATGGAACTGATTTTGGTTGGGGAAGGCCTGCCAAGGTGGAGATAACATCGATAGATAGAGGTTTAAACATTGGGTTTGCAGAGAGCAAGGATGGGAAAGGTGGGGTTGAAGTGGGGTTAGTTCTGAATAAACATGCGATGGATCTGTTTCATGCTATTTTTCATGCGGGGCTATGCTTTGACTAA 1437 0.4523 MASSNNSIKIHEHCLVAPPSATATHFSLPLTFFDLIWLRFHPVERIFFYALSLPHSDPSFFFEKVVPKLKASLSQTLQRFLPLAGNVVWPSDSHEPFIQFNPGDGVSLVLAQCDDDAEFNHFLDNSPREATKSRTLVPHLESSDSAASVISLQITLFPNKGFCIGISTHHAVLDGKSSTVFVKAWAYACRSGEEESPPSLVPELEPFFDRDLIKDPTGLESVFINNWSQILSKMDPSDTSHGRSLNIMSLPIKDHSVRATFELKRGDLEKIRKRVLSKWELVDEAKPNFASSKPTTLSTFVTSRAYVSVCIAKALHEPQNIQKFALGLTVDCRARLEPPIPENYFGNCVASHIVDTQPEDFIKEDGVVVVAKRIWSKIKMLDKGALDGVETVFSRFLVMLSEGVKGMGVAGSNRFGVYGTDFGWGRPAKVEITSIDRGLNIGFAESKDGKGGVEVGLVLNKHAMDLFHAIFHAGLCFD 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0366 478 Pfam Transferase family 8 468 - -
Ssu3g0366 478 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 5 476 - -
Ssu3g0366 478 Gene3D - 253 477 IPR023213 -
Ssu3g0366 478 PANTHER - 5 476 - -
Ssu3g0366 478 SUPERFAMILY CoA-dependent acyltransferases 295 444 - -
Ssu3g0366 478 Gene3D - 7 240 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0366 Ssu-Chr3 8018717 8020153 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0366 8 467 Monolignol Biosynthesis Gene Families AT5G48930 24.268 1.88e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0366 - - gmx:100813762 786.178