Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0365 ATGGCTTCTCACAACATCAAAATCCACGACCACTGCACTGTCGCCCCTCCACCAGCAACACCCCAAACATCCCTCTCTCTCACTTTCTTCGACTTGTTCTGGCTCAGGTTCCACCCAGTGGAGCGCATCTTCTTCTACACCCTCCCCACACCCGAATCCCACCCCTCCACTTTCTTCTCCAAAGTGGTTCCGAACCTCAAAACCTCCCTCTCCCGCACCCTCCAACACTTCCCCCCTCTAGCCGGCAACGTCGTTTGGCCCAATAATTCCCCAAACCCCATCGTCCAATACACCCCAGGCGACGTCGTTTCCCTCACTGTAGCAGAATCCGACGCCGACTTCAACCACGTCTTGGATAACTCACCGCACGACGCATCAGAGTCACGCTCTCTAGTGCCCCACTTAGAATCCTCGGATTCTCGCGCTTCCGCTCTCTCTCTCCAAATCACTTTCTTCCCCAACAGAGGTTTCACCATAGGCATCAGCACCCACCACGCCGTCCTCGACGGAAAATCCTCAACCGTGTTCATCAAAGCCTGGGCTTCTCAATGCCGAACACAGACGCCATCTTTGGCGCCAGAGTTTGAGCCTTTCTTTGATAAAACGGTCATCAAAGCCGCAAGCGATTTGGGACTCAACTTCACGGACAACTGGTCCCAGATCTTAACCAAACTGTTCCCTCACGAAAACAGCGACGGTCGATGCTTGAAGCTTCTACCGTTCCCGCCGAGACTCGAGGACGCGGTTCGAGCCACGTTCGCGCTCGCGCGAGCAGATTTGGACAGGTTAAGGAAAAGGGTCTTGTCCAAGTGGGACACAGTTAAAAAAGGATCAGAATCAAACGGTTTGTTTTCGAAGCCACCCACGTTGTCGTCCTTTGTTCTCGCGTGCGCTCACGTGCTAGTTTGCATCGCGAAGGCCTTCGACGGGGTTGAAGAGGGGAGACACAAATTTGGTTTTGGGTTCACGGTGGATTGCAGGGCAAGGTTGGAGCCTCCGATCCCTGATAACTATTGCGGCAACTGCGTGTGGGGGCACATGATCGATACGGAACCGTTGGACTTCATCCACGAAGAAGGGGTCGTTATTGTTGCGAAGAGAATTCACggtaaaataaaagagatgctGGATGAGGGGGTTTTTCATGGGGCCGGGAGTGCGTTTTCTAGGTACGAGGCTGCGGCGAGTGAGGGAGTTGAAATCATGGGAATTGCCGGGTCTAACCGGTTTGGGGTTTATGGGACCGATTTTGGGTGGGGAAAGCCTGCGAAGGTGGAGATAACGTCGGTGGATAGAGCCTTAACCATTGCGTTGGCAGAGAGTGGGGATGGGAATGGTGGGGTTGAAGTGGGGTTAGTTCTGAATAAACATGTGATGGATCTCTTCGGTTCTTTGTTTCGCGGAGGAGTGTCACACGATTGA 1422 0.5288 MASHNIKIHDHCTVAPPPATPQTSLSLTFFDLFWLRFHPVERIFFYTLPTPESHPSTFFSKVVPNLKTSLSRTLQHFPPLAGNVVWPNNSPNPIVQYTPGDVVSLTVAESDADFNHVLDNSPHDASESRSLVPHLESSDSRASALSLQITFFPNRGFTIGISTHHAVLDGKSSTVFIKAWASQCRTQTPSLAPEFEPFFDKTVIKAASDLGLNFTDNWSQILTKLFPHENSDGRCLKLLPFPPRLEDAVRATFALARADLDRLRKRVLSKWDTVKKGSESNGLFSKPPTLSSFVLACAHVLVCIAKAFDGVEEGRHKFGFGFTVDCRARLEPPIPDNYCGNCVWGHMIDTEPLDFIHEEGVVIVAKRIHGKIKEMLDEGVFHGAGSAFSRYEAAASEGVEIMGIAGSNRFGVYGTDFGWGKPAKVEITSVDRALTIALAESGDGNGGVEVGLVLNKHVMDLFGSLFRGGVSHD 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0365 473 Gene3D - 245 472 IPR023213 -
Ssu3g0365 473 SUPERFAMILY CoA-dependent acyltransferases 64 222 - -
Ssu3g0365 473 PANTHER - 1 472 - -
Ssu3g0365 473 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 1 472 - -
Ssu3g0365 473 SUPERFAMILY CoA-dependent acyltransferases 293 437 - -
Ssu3g0365 473 Gene3D - 5 227 IPR023213 -
Ssu3g0365 473 Pfam Transferase family 6 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0365 Ssu-Chr3 7995902 7997323 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0365 5 462 Monolignol Biosynthesis Gene Families AT5G48930 24.786 6.24e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0365 - - gmx:100814826 724.546