Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0361 ATGGTACGGTGGAACAGAATTTTGACAAGCATAAAGTGGAAGGACAAAACTCTGCACCTAGCAACCAACAATGAGATACATAAGACCATGATTAAGAGCCCAAAAGAAGCAGATTTTCCGTTAAAACAGGAGGGTCATTCTAATTCAAGTGATCATGAAAAGGCAAAGGCTACATCAAGCTCAGCACAATGGCCAAGATTGAAGGATCCAAGGATTGTTCGAGTATCTAGAGCCTTTGGAGGAAAAGACAGGCATAGCAAGGTTTGCACAATAAGAGGGTTAAGAGACAGGCGTGTGAGGCTATCAGTGCCAACTGCCATCCAACTCTATGATCTTCAAGATAGGCTAGGGCTCAGTCAACCTAGCAAGGTTGTTGATTGGTTACTCGATGCAGCTAAGCACGAAATTGATGAACTTCCACCACTGCCCAATATTCCTTCAGTGAATAACTTCACCTTTGGTTATCCATCTGCTGTTACTTCTAATGAAGCTACCACCTCTCATTCTCAGCCTAATGAACAACTTCTTAGTATCAATAGGAGCATTCAGTGGGAAGGTTCAAGCCAAAATTCTACATGGAaattaaagcctaaagaggtttCAGGAGAAATGGTTAGCACTGATAAAGCAAATTGGATAAATAGAAGTGAAGAGGATAAGCAAGGAAGAAATAATGAAGGTCCTAGCACACATGTTATACCAAATAATCTCTTACCAAGAGCAAACAATCCTTCATTCTTGGGCCTGCTAAATACTATGCCACATGGTTACCAATGGGAACCTTCTGCTGGTGATGTTTCTCATCAATTGGGAAACAACGGATTTTCAAACCAAGCAGACATACACAGCATTAACGTTGTACCTTTCCCAACATCAACATTGTCTTTGTCAACTGGGAATTCACAAATTCTGCTGTGTCCTCCAGGAGCAACACAGCCATATTTCCCTTCACATGTTACAGCAATGGACATGGATCCGAGACAAATCAACCACTATCAGATGTTGAGTTCAGGTTCTCAAAATCCATTGGCGAATTCTCTCAATAATTCTTTCAGCTTGGCTATGATGACTCATAAACCTCTCCATTCACCCAACAGCAGCAAAAGCCCATCCCAGAAAGACCAAGATTTCCCTTCCAAGTGA 1143 0.4112 MVRWNRILTSIKWKDKTLHLATNNEIHKTMIKSPKEADFPLKQEGHSNSSDHEKAKATSSSAQWPRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDAAKHEIDELPPLPNIPSVNNFTFGYPSAVTSNEATTSHSQPNEQLLSINRSIQWEGSSQNSTWKLKPKEVSGEMVSTDKANWINRSEEDKQGRNNEGPSTHVIPNNLLPRANNPSFLGLLNTMPHGYQWEPSAGDVSHQLGNNGFSNQADIHSINVVPFPTSTLSLSTGNSQILLCPPGATQPYFPSHVTAMDMDPRQINHYQMLSSGSQNPLANSLNNSFSLAMMTHKPLHSPNSSKSPSQKDQDFPSK 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0361 380 ProSiteProfiles TCP domain profile. 81 139 IPR017887 -
Ssu3g0361 380 MobiDBLite consensus disorder prediction 208 238 - -
Ssu3g0361 380 MobiDBLite consensus disorder prediction 39 53 - -
Ssu3g0361 380 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 30 376 IPR005333 GO:0003700
Ssu3g0361 380 MobiDBLite consensus disorder prediction 39 64 - -
Ssu3g0361 380 Pfam TCP family transcription factor 81 215 IPR017887 -
Ssu3g0361 380 MobiDBLite consensus disorder prediction 358 380 - -
Ssu3g0361 380 PANTHER TRANSCRIPTION FACTOR TCP2-LIKE 30 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0361 Ssu-Chr3 7914504 7915646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0361 64 334 TCP Transcription Factor Family AT3G02150 42.403 4.84e-48 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ssu3g0361 TCP 4.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0361 - - gmx:100816424 684.485