Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu3g0359 | ATGTCTGGAAAGGCTTTGAAATCCTTGAAGGATGAAAACCCAGATTTGCAGAAGCAAATTGGATGCATCACTGGATTTTTTCAGTTCTTTGACCGCCACCGTTTCCTCACAGGCCAGCGCACTGGTAGCTACATTCAGCACAGGCCTACTTCAGGTGGAAGCAGTAATGAAATCAAAGAGCTCAATGGTACAATGCATAAAACTAAGGCAAAAGATCAGAAGATTGCGAGAGAAAAGCAACAATTCTCCACAGAGTCCTCCATAGCTTCTTTGTCTTCATCATCTTGTTCATCTAGCATGTCATCCCTTGAGTTTAACAGAACAATTCAGACACAATCACCATCAAGAAATCGAATCAGAATTCCGGAAAAGACAAATTCAAAAGTAGCAAAGAAGCAGCCTGATAACCCACGCCAGCAATCCCTCCATTTCCATCACATTGTCAATGACTCAATGCATAAAGAAGGTCAAGGATTGTCTGTGAAAACTGTGGctaaagaggaaaagaagggtCTGACTAATGCCTTGAAACACATCGATTCCCCCCGGCCATTGCGGTCACACAAATCTGTCAATTCAGGGGTAACAGTTGCCAGTGAACCATTCCATGCTCTTGCCAAGTCCAAGAGAACACCTTGGGACTCGCCACGACTCTCTTATGATGATACATTCAAATCTGCCACAAAGCATAAGGAACTCCCAAGGCTTTCTTTGGACAGCAGAGAAGGATCCAATAGAGGTTCCAGTGAAGGAAACAAGTCTCGCAACCTGTTGAAGGGTCCACAGAAAGGGTATGGGAGGAACTCCAGCGCAATGATCAACCAGCTACAAGAACCAGAAACTTCCAAAAGATCTTCCAGTGTTGTAGCTAAGTTGATGGGACTTGAAGCCCTCCCAGAGTGTACACAAACTTGTGGGAGTCCAATGGGAACTTCTCCTTGCTCTACCAAAAAGAATGAGATCTTGGCAACATCTAGCACAAGTGATGAACTCAAGCAACACCAAAGATTCACCTCGCCTCAGTCTAGAAGGGCTGATTCAATCACAAATGTGACACCATATTCACGATTTGCGCTAGAACCAACTCCGTGGAGGCAACCTGATACAAGCCAAAGTTCTCAAACCCAAGCTTCCAAGGGAAGTGAATCTGATATAAAAGCCTCAAAGTCCTCTCTCAATGTATATGGGGAAATTGAGAAAAGGGTGGCAGAACTTGAGTTCAAAAAGTCTGGAAAGAATCTCAGAGCCCTCAAACAGATTCTAGAAGCAATGCAGAGACATAAAGATTCATTAGACATTGCTAGGGATCAGGCTTCAAATTCTCCATCTGACAATAGGAATAGTACTAATCTCAATGAAAGCTCGAAATTACAAAGCCCACGAGTACGACAAAAAGACCCGGCATCTGTCACAGTTGAGATGTCAAATTCACCCAGGGGTAGTAAATTGCCAATTGTCGTCATGAAACCTGCGAAAGTTACTAGAAAAGCCAATAATCCTTCTTCTACAGAATTGTCAATTCATGGTAAATCTGGTCTCAGCAAGTGTTCCCCTAGTAATCCCACAAATGGAAGATTGGTTGACAAGCAAAGTGCTAAAGGTATCAGTTCAACAACAAAAAGCATCAAGGATCCTTTTGTTCAACAAGTTCGTTCatcagataaaaataataacgtGAGAACTTCAAAGTTGACGCAATCCTTGAAAGTTTCTCAAGACAGCAGTGGAGAAAGCACCACCAACGCTGGTTATATGACAGTGAGTGGGAGCCCCAGACTACAAAAGAAGTTTGATTTGCAGAGGCGTTCGCAACCAACAAGTCCATCATCATCAGATTCCAGCATTAACAGAAGAGAGCACAATAGGCAACCTGTGGAATTGTCTTCTCCAAGTACAACACCAAGACATGAGTTCTCCACTTTGCAGCAAAGAAATGAACGTTTCAGTGAGATCAGCTGTCACTGGAGGGATTTGAAGCATCATGTTAATGTCATTTCTGATTTTGACGACAAAAGAAGCCCGGCCAGTCATAGTGAGATTGAAGTCATTCGCATTGATCTATCCGGAAAGATCATTAGCTCCTCCATCCAGCTGAGTGGcatgaataaaaatgtaagtATTTCTTCCTTACATAATAAGATTTTgcttctatttcaattggttaaACATTCTTTTGTTGACCAGAATGCATTTGAAGAGTTGAGGAAGGAACTCTCCAAGGCTGAGACAATAGTTACTGCAGAACAACCAAGTCCTGTGTCTGTTCTCGATGCTGCATTCTATAGGGAAGACCCACCATCTCCAGTGAAAAAGAAATCAGACATCTCAAAAAATTTAGGTGAAGCTCTAAGCACTGATGATGATAGTGAAGCGAACTCAGTGGATAATCTTCAAGAAATTGACTGGATTGATGAGAAATTCATCAATTTCAATAACATTAAGGATCCTGGCCATAAGTATATATCAGAAATACTGTTAGCATCAGGTCTGCTCAGTGGCCACAGCTCTAGCCAGATATTTCATTCACCGGGTCACTTGATTAATCCAAAATTGTTCTTTGCACTTGAACAAATGAAGACAAAGAAGAGGCATTTTGATATTGAAGACAGCGCCAAGAAGATACCCAGGATTATGAATCCTGAGCAAATGCAAAGAAAACTCATATTTGATGTTGTCAATGACATTTTAGTTCAAAAGCTGATATTGGATAGTTCTTCTGCATTGTGGTGCCAACCAAATGAGTTAGCAGGCACAACACTAAGAGGGCGACAACTTTTGGAAGAGCTATGCACAGAAATAGATCAGTTGCAACCTCAAAATAGGAATGTCAGCCTAGTGCATGAGGATGAGAATTTGAAGCATCACCATGCAATTTGGACTAACTGCTACAATGAGATGCCAAATATTGTGTTGGATATTGAACGTTTGATCTTTAAGGATTTGATAAATGAGGTTGTGAGAAGTGGAGCAGCAAACCATTCTGGTACGCATTGCAGGCAACTGGTATTTCCCAAGTAG | 3018 | 0.4095 | MSGKALKSLKDENPDLQKQIGCITGFFQFFDRHRFLTGQRTGSYIQHRPTSGGSSNEIKELNGTMHKTKAKDQKIAREKQQFSTESSIASLSSSSCSSSMSSLEFNRTIQTQSPSRNRIRIPEKTNSKVAKKQPDNPRQQSLHFHHIVNDSMHKEGQGLSVKTVAKEEKKGLTNALKHIDSPRPLRSHKSVNSGVTVASEPFHALAKSKRTPWDSPRLSYDDTFKSATKHKELPRLSLDSREGSNRGSSEGNKSRNLLKGPQKGYGRNSSAMINQLQEPETSKRSSSVVAKLMGLEALPECTQTCGSPMGTSPCSTKKNEILATSSTSDELKQHQRFTSPQSRRADSITNVTPYSRFALEPTPWRQPDTSQSSQTQASKGSESDIKASKSSLNVYGEIEKRVAELEFKKSGKNLRALKQILEAMQRHKDSLDIARDQASNSPSDNRNSTNLNESSKLQSPRVRQKDPASVTVEMSNSPRGSKLPIVVMKPAKVTRKANNPSSTELSIHGKSGLSKCSPSNPTNGRLVDKQSAKGISSTTKSIKDPFVQQVRSSDKNNNVRTSKLTQSLKVSQDSSGESTTNAGYMTVSGSPRLQKKFDLQRRSQPTSPSSSDSSINRREHNRQPVELSSPSTTPRHEFSTLQQRNERFSEISCHWRDLKHHVNVISDFDDKRSPASHSEIEVIRIDLSGKIISSSIQLSGMNKNVSISSLHNKILLLFQLVKHSFVDQNAFEELRKELSKAETIVTAEQPSPVSVLDAAFYREDPPSPVKKKSDISKNLGEALSTDDDSEANSVDNLQEIDWIDEKFINFNNIKDPGHKYISEILLASGLLSGHSSSQIFHSPGHLINPKLFFALEQMKTKKRHFDIEDSAKKIPRIMNPEQMQRKLIFDVVNDILVQKLILDSSSALWCQPNELAGTTLRGRQLLEELCTEIDQLQPQNRNVSLVHEDENLKHHHAIWTNCYNEMPNIVLDIERLIFKDLINEVVRSGAANHSGTHCRQLVFPK | 1005 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu3g0359 | 1005 | MobiDBLite | consensus disorder prediction | 231 | 268 | - | - | |
| Ssu3g0359 | 1005 | Pfam | Domain of unknown function (DUF4378) | 818 | 984 | IPR025486 | - | |
| Ssu3g0359 | 1005 | MobiDBLite | consensus disorder prediction | 325 | 356 | - | - | |
| Ssu3g0359 | 1005 | MobiDBLite | consensus disorder prediction | 325 | 388 | - | - | |
| Ssu3g0359 | 1005 | MobiDBLite | consensus disorder prediction | 600 | 614 | - | - | |
| Ssu3g0359 | 1005 | MobiDBLite | consensus disorder prediction | 495 | 588 | - | - | |
| Ssu3g0359 | 1005 | PANTHER | LONGIFOLIA PROTEIN | 726 | 794 | IPR033334 | GO:0051513 | |
| Ssu3g0359 | 1005 | PANTHER | LONGIFOLIA PROTEIN | 1 | 711 | IPR033334 | GO:0051513 | |
| Ssu3g0359 | 1005 | MobiDBLite | consensus disorder prediction | 241 | 256 | - | - | |
| Ssu3g0359 | 1005 | Coils | Coil | 417 | 437 | - | - | |
| Ssu3g0359 | 1005 | MobiDBLite | consensus disorder prediction | 175 | 194 | - | - | |
| Ssu3g0359 | 1005 | PANTHER | LONGIFOLIA PROTEIN | 792 | 1004 | IPR033334 | GO:0051513 | |
| Ssu3g0359 | 1005 | MobiDBLite | consensus disorder prediction | 364 | 388 | - | - | |
| Ssu3g0359 | 1005 | PANTHER | LONGIFOLIA PROTEIN | 1 | 711 | - | - | |
| Ssu3g0359 | 1005 | PANTHER | LONGIFOLIA PROTEIN | 726 | 794 | - | - | |
| Ssu3g0359 | 1005 | MobiDBLite | consensus disorder prediction | 435 | 643 | - | - | |
| Ssu3g0359 | 1005 | MobiDBLite | consensus disorder prediction | 625 | 643 | - | - | |
| Ssu3g0359 | 1005 | PANTHER | LONGIFOLIA PROTEIN | 792 | 1004 | - | - | |
| Ssu3g0359 | 1005 | MobiDBLite | consensus disorder prediction | 435 | 478 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu3g0359 | Ssu-Chr3 | 7868112 | 7872947 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu3g0359 | 142 | 986 | TRM (TON1 Recruiting Motif) Superfamily | AT1G74160 | 32.306 | 1.20e-87 | 299 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu3g0359 | - | - | gmx:100808151 | 1568.9 |