LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu3g0355	ATGGAACCAACTGGCACACGAATTGCTTTAGGAGCCACCCTCCTCTTCCTCTCGTTGTGCCTCCCTTACGTTTCCATAGCAGAGGTTATTTATCGTCCCTCTGAACTCTTCAGCTTCAACTGTGGCTCATCCACCAACTTATCCACGCCCGATGGTCGGAATTGGACTGCAGACATGGAATTCCTTTCAGAAAAACAGAACTCAGTTGCTACTACTGCACTCACACCATCTACCCAAGAGGGTCCTTACACCTATGCTCGTCTCTCGCACTCCCAATTCTCCTACTCATTCCCTGTCATCACCGCAGGCCCAAAGTTCCTTCGCCTCTTCTTCTACTCAACTTCATACCAAAACTTTGATCGCTCCAAGGCCTATTTCTCAGTCAAAGCAGGCCCATACATCCTCCTTCAAGATTTCAATGCTTCCCTCAATGCTGATGCTGATGAAAACGCTGACGACATCTTGTTCAGAGAGTATTGCATCCATCTTGAAGATGGTGAGAGGCTCAACATAGCCTTCATTCCAAGCACCACAGATTCGTACGCTTTCATCAATGGAATCGAGATTGTTTCCATGCCCCCTTATCTCTACTACACCAATCCTAACGTCGACGACACTGGATTGCCGCAACTTGTTGGAGTAGATGGAGCAACATATCCTATTCAAAACAACTCAGCTCTCGAGACAAAGTACCGATTAAACGTTGGAGGAGCAGATATCCCTTCCTCAGGGGACACGGGTATGCTCAGAACCTGGGATGCCGATGACAAATATGTAGCCAGTCAAAGTGTACCATCTGTTGATTATGAGAATAGAACTAAGCTGAACTTCACTAAGACTCCTAACTACACGGCACCAGACATAGTGTACCGAACCTTAAGGAATATGGGACCGGATCCCTCTGTGAACATGAGGTTCAACCTCACTTGGCAGCTTCCCGTTGATTCTGGCTTTCCCTACTTGCTAAGGTTACATTTTTGCGAGCTTAACCCAGAGGTTCTCGCCCCTGGCGACATGAGATTCTACATCTTCATTCAGGATCAGTTGGCTACCGATTGGGCAGACGTTCTTGCGTGGAGCGATAACCAGAAGGGTGTACCGGTGGTTAAAGACTATGCAGTCTTAATCCCAGGGAATCCGAGAAAGGCAAATCTTTCACTGAAAATGCACCCTCACCCTGAAAGCTTGATCAAGGAAGCACAACTAAATGCAATTGAACTCTTCAAAATCAACGACTCAACAGGTAGTCTCGCTGGACCGAACCCAGACCCTCTTCCACAAACCCCCAAGGTTTCCCCTCAAAGCTCAAACAAGAAAAGCAGCGGCACCACAAGAACCCTCGCCGCCGTCGCAGGTGCAGTTTCCGGTGTCGTTTTGCTCTCTCTTATTGTCGTTTTCTTCTTCATCAAACGCAAGAAGAACGTCGCCAAGCAAAAAGACGGCACTTCTCAACCATCACTACCAACCAACCTTTGCCGCCACTTCTCAATCGCAGAAATCAGAGCCGCCACCAACAACTTCGACGAACTCTTCGTCGTTGGCGTGGGAGGCTTCGGCAACGTGTACAAAGGCTACATCGACGACGGTTCAACACGTGTCGCAATCAAAAGGCTCAAACCGGGTTCTCGGCAAGGTGCACGCGAGTTCGTGAACGAGATCGAGATGCTCTCTCAACTTCGTCATCTCAATCTCGTTTCCCTCATCGGTTACTGTTACGAGAACAACGAGATGATACTCGTTTACGAATTCATGGATCGCGGAACCCTCCGTGACCATCTCTACGACACCGATAACCCTTTCCTCTCGTGGAAGCAAAGGCTGCAGATCTGCATAGGTGCTGCGCGAGGACTGCATTATCTTCATACAGGTGCGAAGCACATGATCATCCACCGTGACGTGAAGAGCACCAATATCTTACTGGATGAAAAATGGGTAGCCAAGGTTTCGGATTTCGGGTTATCCCGAATTGGGCCCACGAGTTCTTCAATGACCCATGTGAGCACTCAGGTGAAAGGCAGTGTTGGATATTTAGACCCGGAGTATTACAAACGACAGCGTTTGACGGAGAAGTCTGACGTGTACTCGTTTGGGGTGGTGCTGTTGGAGGTATTGTCTGGGAGGCAGCCTTTGCTCCGTACGGTGGAGAAGCAACAGATGTCGTTGGTTCATTGGGCGAAGAGTTACTATGAGAAGGGAACTCTGACTGAAATTGTGGATCCAAAACTGAAGGGCAAGATAGCACCCGAGTGTTTGCGTAAATTTGGTGAGGTTGCACTGAGTTGTTTGCTTGAGGATGGGACTCAGCGGCCTTCCATGAACGACGTCGTTGGGGTGCTGGAGTTTGTTCTGCAGCTTCAGGATAGCGCTGTTATTGGAGTGGTGGAGAGTGGTGGGAATTATGAAGATAGTGATGACATGTTTAGCGTTAGCCAAAGTAGTAGACATACTTCTGATTATAGTAAGAGCACTGGTTTGAGTATGACCAGCGATGGAGATCATAGCTATGTGAGTAAGGAATCTGAGCATGTTTTCTCGGAGATTAAGGATCCAAAGGGACAATGA	2562	0.4832	MEPTGTRIALGATLLFLSLCLPYVSIAEVIYRPSELFSFNCGSSTNLSTPDGRNWTADMEFLSEKQNSVATTALTPSTQEGPYTYARLSHSQFSYSFPVITAGPKFLRLFFYSTSYQNFDRSKAYFSVKAGPYILLQDFNASLNADADENADDILFREYCIHLEDGERLNIAFIPSTTDSYAFINGIEIVSMPPYLYYTNPNVDDTGLPQLVGVDGATYPIQNNSALETKYRLNVGGADIPSSGDTGMLRTWDADDKYVASQSVPSVDYENRTKLNFTKTPNYTAPDIVYRTLRNMGPDPSVNMRFNLTWQLPVDSGFPYLLRLHFCELNPEVLAPGDMRFYIFIQDQLATDWADVLAWSDNQKGVPVVKDYAVLIPGNPRKANLSLKMHPHPESLIKEAQLNAIELFKINDSTGSLAGPNPDPLPQTPKVSPQSSNKKSSGTTRTLAAVAGAVSGVVLLSLIVVFFFIKRKKNVAKQKDGTSQPSLPTNLCRHFSIAEIRAATNNFDELFVVGVGGFGNVYKGYIDDGSTRVAIKRLKPGSRQGAREFVNEIEMLSQLRHLNLVSLIGYCYENNEMILVYEFMDRGTLRDHLYDTDNPFLSWKQRLQICIGAARGLHYLHTGAKHMIIHRDVKSTNILLDEKWVAKVSDFGLSRIGPTSSSMTHVSTQVKGSVGYLDPEYYKRQRLTEKSDVYSFGVVLLEVLSGRQPLLRTVEKQQMSLVHWAKSYYEKGTLTEIVDPKLKGKIAPECLRKFGEVALSCLLEDGTQRPSMNDVVGVLEFVLQLQDSAVIGVVESGGNYEDSDDMFSVSQSSRHTSDYSKSTGLSMTSDGDHSYVSKESEHVFSEIKDPKGQ	853

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu3g0355	853	Gene3D	Transferase(Phosphotransferase) domain 1	584	794	-	-
	Ssu3g0355	853	MobiDBLite	consensus disorder prediction	803	833	-	-
	Ssu3g0355	853	Gene3D	Phosphorylase Kinase; domain 1	492	583	-	-
	Ssu3g0355	853	Pfam	Protein tyrosine and serine/threonine kinase	513	777	IPR001245	GO:0004672\|GO:0006468
	Ssu3g0355	853	MobiDBLite	consensus disorder prediction	802	853	-	-
	Ssu3g0355	853	ProSitePatterns	Protein kinases ATP-binding region signature.	513	536	IPR017441	GO:0005524
	Ssu3g0355	853	PANTHER	CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN	29	825	-	-
	Ssu3g0355	853	CDD	STKc_IRAK	522	780	-	-
	Ssu3g0355	853	Pfam	Malectin-like domain	40	410	IPR024788	-
	Ssu3g0355	853	MobiDBLite	consensus disorder prediction	416	441	-	-
	Ssu3g0355	853	Gene3D	-	35	192	-	-
	Ssu3g0355	853	Gene3D	-	226	412	-	-
	Ssu3g0355	853	SUPERFAMILY	Protein kinase-like (PK-like)	482	782	IPR011009	-
	Ssu3g0355	853	ProSiteProfiles	Protein kinase domain profile.	507	782	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu3g0355	853	PANTHER	OS07G0166700 PROTEIN	29	825	IPR045272	GO:0004714\|GO:0006468
	Ssu3g0355	853	SMART	serkin_6	507	782	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu3g0355	853	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	628	640	IPR008271	GO:0004672\|GO:0006468
	Ssu3g0355	853	MobiDBLite	consensus disorder prediction	834	853	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu3g0355	Ssu-Chr3	7663023	7665584	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu3g0355	26	853	Receptor kinase-like Gene Family	AT3G51550	47.576	0.0	721

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Ssu3g0355		Malectin_like	3.7e-38	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu3g0355	-		-	gmx:100814046	1248.42