Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0352 ATGACACATGTGAGCACTCAGGTGAAAGGCAGTGTTGGATATTTAGATCCGGAGTATTACAAACGACAGCGTTTGACTGAGAAGTCTGATGTGTACTCGTTTGGGGTGGTGCTGTTGGAGGTATTGTCTGGGAGGCAGCCTTTGCTGCGTATGGTGGAGAAGCAACAGATGTCACTGGTTCATTGGGCAAAGCATCTATATCACAAGGGCTCTCTGGGTGAGATTGTGGATCCAGCACTTATAGGCCAGATAGCACCCGAGTGTTTGCGCAAGTTTGGAGAGGTTGCCTTGAGTTGTTTGCTTGAGGATGGGACTCAGCGACCTTCCATGAACGACATCATTGGGATGCTGGAGTTGGTTCTGCAGCTTCAGGATAGTGCTGTTAATGGAGTGACAGAGAGTCGAGGGGATTATGAAGATAGTGAGGACATGTTTAGCTGTAGCCATAGTAATGTTCATGTTTTGGATACTAGTAATAGCACTGGATTGAACATTACAAGCAATGATAGCTGTGGGAGTAAGGAATCTGACAGGTTGATCCCCGAGAACGTTTTCTCTGAGATTAAGGATCCAAAAGGACGATGA 585 0.465 MTHVSTQVKGSVGYLDPEYYKRQRLTEKSDVYSFGVVLLEVLSGRQPLLRMVEKQQMSLVHWAKHLYHKGSLGEIVDPALIGQIAPECLRKFGEVALSCLLEDGTQRPSMNDIIGMLELVLQLQDSAVNGVTESRGDYEDSEDMFSCSHSNVHVLDTSNSTGLNITSNDSCGSKESDRLIPENVFSEIKDPKGR 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0352 194 Pfam Protein tyrosine and serine/threonine kinase 4 115 IPR001245 GO:0004672|GO:0006468
Ssu3g0352 194 ProSiteProfiles Protein kinase domain profile. 1 121 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0352 194 PANTHER OS07G0166700 PROTEIN 2 163 IPR045272 GO:0004714|GO:0006468
Ssu3g0352 194 Gene3D Transferase(Phosphotransferase) domain 1 1 143 - -
Ssu3g0352 194 SUPERFAMILY Protein kinase-like (PK-like) 3 118 IPR011009 -
Ssu3g0352 194 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 2 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0352 Ssu-Chr3 7418240 7418824 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0352 2 194 Receptor kinase-like Gene Family AT3G51550 49.020 1.04e-54 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Ssu3g0352 PK_Tyr_Ser-Thr 2.2e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0352 - - gmx:100814046 312.383