Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0351 ATGGACTCAACTGGCACACGAATTGATTTAGGAGCCATCCTTCTCCTCGTCCTCTTGTTGTGCCCCCCTTACGCTTCCATAGCAGAGGTTATCTATCGTCCCGCTGACCCCTTCAGCATCAACTGTGGCTCATCCAACAACTTGTTCACGCCCGATCGGAATTGGACTGGAGACACGAAATTCCTCTCAGAAAGAGGGGACTCAGTTCTAGCTCCTGCACTCACGCCATCTACCATACTGGGTCCTTACACCTCAGCTCGCCTCTCTCACTCCCATTTCACATACTCATTCCCCGTCACCTCAGGCCCAAACTTTCTTCGCCTCTTCTTCTACTCAACTTCATACCAAAACTTTGATCGCTCCAAAGCCTATTTCTCAGTCAAAGTAGGTCCATACACCCTCCTTCAAGATTTCAATGCTTCCCTCAATGCTGATGCTGATGACGACCCTGGCCACCCCGACATCTTGTTCAGAGAGTATTGCATCAACGTCCTCGAAGATGGTCAGAAGCTCAACATAACCTTCATTCCAAACACCACAGATTCTTACGCTTTCATCAATGGAATCGAGATTGTTTCCATGCCCCCTTATCTCTACTACACCAATCCTGACGTCGAGAACACTGGACCTCAAGCTGTTGGCACCACAATCCAATATCAAATTGAAAACAACTCAGCTCTGGAGACAAAGTACCGGCTAAGAATGGGAGGACCAACAATCCCCCCCTCAGGGGACACGGGTATGCTCAGGACCTGGGATGCCGATAACAAATATGTAACTACTCAAAGTGAAGTATCTGTTGATTATGGGTCTGGAATTAAGCTGAATTTCACTCAGCAGACTCCTAACTACACGGCACCAGACCAAGTGTACCGAACCTCGAGGAGCATGGGAAGGACTGGCTCTATCAACATGGGATTCAACCTCACTTGGCAGCTTCCCGTTGATTCTGGCTTCACCTACATGCTAAGGTTACACTTTTGCCAGCTTGACTGGCATGTTTGGCAGGCTGGTCACCTGAGTTTCTACATCTTCATAGCGGATCAGTTGGCTACCGATAGGGCTGACGTTCTCTTGTGGACCGATAATCGGATGGGTGTACCAGTGGTTAAAGACTACCTAGTTTCCATCCCAGATACTCAGAAGAAACCAAAACTTTCACTGAAATTGCATCCTCACCCTGAAAGCTGGATCAAGGACGCACAACTAAACGCAATTGAACTCTTCAAAATCAACGACTCAACAGGTAGTCTCGCTGGACTGAACCCAGACCCTCTTCCACAAACCCCGGCGGTTTCTCCCCAGAGCTCAAACAAGAAAAGCAGCGGCACCACAAGAACCCTTGCCGCCGTCGCAGGTGCAGTTTCCGGCGTCGTTTTGCTCTCCCTTATTGTCGCTTTCTTCCTCATCAAACGCAAGAAGAACGTCGCCGTCGACATGGGTTCCAACCAAAAAGACGGAACTTCTCACGGCGGTGGGTCATCATCGCTACCAACCAACCTCTGCCGTCACTTCTCAATCGCAGAAATCAAAGCCGCCACCAATAACTTCGACGAACTCTTCGTCGTTGGAGTGGGAGGCTTCGGCAACGTGTACAAAGGCTACATCGACGACGGTTCAACACCTGTCGCAGTCAAAAGACTCAAACCGGGTTCTCAGCAAGGTGTGCAGGAATTCATGAACGAGATCGAAATGCTGTCTCAACTTCGTCATCTCCATCTTGTTTCCCTCATTGGTTACTGTTACGAGAGCAACGAGATGATACTCGTTTACGATTTCATGGATCGCGGAACCCTTCGTGACCATCTCTACGACACTGATAACCCATCTCTGTCGTGGAGGCAAAGGCTCCAGATCTGCATAGGTGCTGCACGAGGACTGCATTATCTGCATACAGGTGCGAAGCACATGATCATTCACCGTGATGTGAAGAGCACCAATATCTTGTTGGATGAGAAATGGGTGGCCAAGGTTTCAGACTTCGGGTTATCCCGAATTGGGCCCACGGGTTCTTCAATGACCCATGTGAGCACTCAGGTGAAAGGCAGTGTTGGTTACTTAGATCCGGAGTATTACAAACGACAGCGTTTGACTGAGAAGTCTGATGTGTACTCGTTTGGGGTGGTGCTGTTGGAGGTATTGTCTGGGAGGCAGCCTTTGCTGCGTATGGTGGAGAAGCAACAGATGTCAGTGGTTCATTGGGCAAAGCATCTCTATCACAAGGGCTCTCTGGGTGAGATTGTGGATCCAGCACTGAAGGGCCAGATAGCACCCGAGTGTTTGGGCAAGTTTGGAGAGGTTGCCCTGAGTTGTTTGCTTGAGGATGGGACTCAGCGACCTTCCATGAACGACGTCGTTGGGATGCTGGAGTTTGTTCTACAGCTTCAGGATAGTGCTGTTGATGGAGTGGTGGAGATTGGCGGGGATTATGAAGATAGTGAAGACATGTTTAGCAGTAGCCAAAGTACTGTACATGTTTCGGATTATAGTAATAGCACTGGATTGAACACTACAACCAATGGAGATCGTAGCTATGGGAGTACGGAATCTGACAGGTTGATCCCGATGAATGTTTTCTCTGAGATTAAGGATCCAAAGGGACGATAA 2607 0.4902 MDSTGTRIDLGAILLLVLLLCPPYASIAEVIYRPADPFSINCGSSNNLFTPDRNWTGDTKFLSERGDSVLAPALTPSTILGPYTSARLSHSHFTYSFPVTSGPNFLRLFFYSTSYQNFDRSKAYFSVKVGPYTLLQDFNASLNADADDDPGHPDILFREYCINVLEDGQKLNITFIPNTTDSYAFINGIEIVSMPPYLYYTNPDVENTGPQAVGTTIQYQIENNSALETKYRLRMGGPTIPPSGDTGMLRTWDADNKYVTTQSEVSVDYGSGIKLNFTQQTPNYTAPDQVYRTSRSMGRTGSINMGFNLTWQLPVDSGFTYMLRLHFCQLDWHVWQAGHLSFYIFIADQLATDRADVLLWTDNRMGVPVVKDYLVSIPDTQKKPKLSLKLHPHPESWIKDAQLNAIELFKINDSTGSLAGLNPDPLPQTPAVSPQSSNKKSSGTTRTLAAVAGAVSGVVLLSLIVAFFLIKRKKNVAVDMGSNQKDGTSHGGGSSSLPTNLCRHFSIAEIKAATNNFDELFVVGVGGFGNVYKGYIDDGSTPVAVKRLKPGSQQGVQEFMNEIEMLSQLRHLHLVSLIGYCYESNEMILVYDFMDRGTLRDHLYDTDNPSLSWRQRLQICIGAARGLHYLHTGAKHMIIHRDVKSTNILLDEKWVAKVSDFGLSRIGPTGSSMTHVSTQVKGSVGYLDPEYYKRQRLTEKSDVYSFGVVLLEVLSGRQPLLRMVEKQQMSVVHWAKHLYHKGSLGEIVDPALKGQIAPECLGKFGEVALSCLLEDGTQRPSMNDVVGMLEFVLQLQDSAVDGVVEIGGDYEDSEDMFSSSQSTVHVSDYSNSTGLNTTTNGDRSYGSTESDRLIPMNVFSEIKDPKGR 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0351 868 ProSitePatterns Protein kinases ATP-binding region signature. 523 546 IPR017441 GO:0005524
Ssu3g0351 868 ProSiteProfiles Protein kinase domain profile. 517 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0351 868 MobiDBLite consensus disorder prediction 420 442 - -
Ssu3g0351 868 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672|GO:0006468
Ssu3g0351 868 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 30 835 - -
Ssu3g0351 868 CDD STKc_IRAK 532 790 - -
Ssu3g0351 868 PANTHER OS07G0166700 PROTEIN 30 835 IPR045272 GO:0004714|GO:0006468
Ssu3g0351 868 Gene3D Transferase(Phosphotransferase) domain 1 594 805 - -
Ssu3g0351 868 Pfam Protein tyrosine and serine/threonine kinase 523 786 IPR001245 GO:0004672|GO:0006468
Ssu3g0351 868 MobiDBLite consensus disorder prediction 821 850 - -
Ssu3g0351 868 Gene3D Phosphorylase Kinase; domain 1 502 593 - -
Ssu3g0351 868 SMART serkin_6 517 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0351 868 Pfam Malectin-like domain 40 411 IPR024788 -
Ssu3g0351 868 SUPERFAMILY Protein kinase-like (PK-like) 494 792 IPR011009 -
Ssu3g0351 868 Gene3D - 37 194 - -
Ssu3g0351 868 Gene3D - 226 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0351 Ssu-Chr3 7341076 7343682 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0351 27 868 Receptor kinase-like Gene Family AT3G51550 48.161 0.0 749
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Ssu3g0351 Malectin_like 5.9e-38 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0351 - - gmx:100814046 1311.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0351 3 7341076 7343682 Ssu8g2207 8 58115342 58117783 PCT