Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0347 ATGACCCAATATACCATTGAAAGCAACTCTGCTCTCGAGACGAAGTACCGTTTAAACGTTGGAGGAGCAACAATACCCTCCTCACGGGACACGGGTATGCTCAGGACCTGGGATGTCGATGACGACTACCTAAAATCCGAAAGTGGACCATCTGTTGATTATAAGAATAACACTAAGCTCAGCTTCATTAAGACTCCTAACTACACGGCACCGGACGAAGTGTACCGATCCTTAAGGAATATGGGACCGGATCCTTCTATGAACATGAGGTTCAACCTCACATGGCTGCTTCCCATTTATTCTGGATTCACCTACTTGCTAAGGTTACACTTTTGCCAGCTTGACCCGCAAATTGACGAGGCTGGTGAGCAGATGTTCTACATCTTCATTCAGGATCAGTTGGCTACCGATTGGGCAGACGTTCTCCTGTGGAGCGACAACCAGAAGGGTGTACCGGTGGTTAAAGACTACCAACGAGATGATACTCGTTTACGATTTCGTGGATCGCGGAATCGCGGAACCCTCCGTGACCATCTCTACGGCACAGATAACCCTTCTCTGTCATGGAAGCAAAGGCTCCAGATCTGTATAGGTGCTGCACGAGGACTGCATTATCTTCATACAGGTGCGAAGCACATGATCATTCATCGTGACGTGAAGAGCACCAACATCTTATTCGATGAAAATTGGGTGGCGAAGGTCTCGGACTTCGGGTTATCCCGAATTGGGCCCACGAGTTCTTCAATGACCCATGTGAGCACTCAGGTGAAAGGCAGTGTTGGATACTTAGATCCGGAGTACGGCAAACGACGGCGTTTGACCGAAAAGTCTGACGTGTACTCGTTTGGGGTGGTGCTGTTGGAGGTATTGTCTGGGAGGCAGCCTTTGCTCCGTATGGTGGAGAAGCAACAGATGTCACTGGTTCATTGGGCAAAGCATCTTTATCCCAATGACTCTCTGGGTGAGATTTTGGATCCAGCACTGAAGGGCCAGATAGCACCCGAGTGTTTGCACAAATTTGGAGAGGTTGCACTGAGTTGTTTGCTTGAGGATGGGACTCAGCGACCTTCCATGAAGGACGTCGTTGGGATGTTGGAGTTTGTTCTGCAGCTTCAGAATAGTGCTGTTAATGGAGTGATGGAGAGTGGTGGGGATCATGAAGCGAGTGAGGACATGTTTAGCTGTAGCCATAGTACTGTACGTGTTTCGGATTATAGTAATAGCACTGGATTGAACACTGCAAGCAATGATAGCTATGGGAATAAGGAATCTGAGAGGTTGATCCCCGAGAACGTTTTCTCTGAGATTAAGGATCCAAAATGA 1323 0.4815 MTQYTIESNSALETKYRLNVGGATIPSSRDTGMLRTWDVDDDYLKSESGPSVDYKNNTKLSFIKTPNYTAPDEVYRSLRNMGPDPSMNMRFNLTWLLPIYSGFTYLLRLHFCQLDPQIDEAGEQMFYIFIQDQLATDWADVLLWSDNQKGVPVVKDYQRDDTRLRFRGSRNRGTLRDHLYGTDNPSLSWKQRLQICIGAARGLHYLHTGAKHMIIHRDVKSTNILFDENWVAKVSDFGLSRIGPTSSSMTHVSTQVKGSVGYLDPEYGKRRRLTEKSDVYSFGVVLLEVLSGRQPLLRMVEKQQMSLVHWAKHLYPNDSLGEILDPALKGQIAPECLHKFGEVALSCLLEDGTQRPSMKDVVGMLEFVLQLQNSAVNGVMESGGDHEASEDMFSCSHSTVRVSDYSNSTGLNTASNDSYGNKESERLIPENVFSEIKDPK 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0347 440 SUPERFAMILY Protein kinase-like (PK-like) 171 368 IPR011009 -
Ssu3g0347 440 Pfam Malectin-like domain 4 153 IPR024788 -
Ssu3g0347 440 ProSiteProfiles Protein kinase domain profile. 60 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0347 440 MobiDBLite consensus disorder prediction 408 440 - -
Ssu3g0347 440 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 171 412 - -
Ssu3g0347 440 Gene3D - 11 184 - -
Ssu3g0347 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Ssu3g0347 440 Pfam Protein tyrosine and serine/threonine kinase 172 364 IPR001245 GO:0004672|GO:0006468
Ssu3g0347 440 PANTHER OS07G0166700 PROTEIN 3 157 IPR045272 GO:0004714|GO:0006468
Ssu3g0347 440 PANTHER OS07G0166700 PROTEIN 171 412 IPR045272 GO:0004714|GO:0006468
Ssu3g0347 440 MobiDBLite consensus disorder prediction 408 422 - -
Ssu3g0347 440 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 3 157 - -
Ssu3g0347 440 SMART serkin_6 128 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0347 440 Gene3D Transferase(Phosphotransferase) domain 1 185 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0347 Ssu-Chr3 7047896 7049838 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0347 173 440 Receptor kinase-like Gene Family AT3G51550 55.914 6.91e-93 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Ssu3g0347 PK_Tyr_Ser-Thr 7.5e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0347 - - gmx:100814046 459.144