Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0346 ATGGACACATCTTGCACACGAATTGATTTAGGAAccatcctcctcctcctcctgtTGTTGTGCCTCCCTTTCCCTTCCATAGCGGATGTTATTTATCGTCCCCCTGACCTTTTCAGCGTCAACTGTGGCTCACCCAACAACTTTTCCGCGCCCGATGGTCGGAATTGGACTGGAGACATGAGATTCCTCTCAGAAAGCCACGACTCAGTTGCTGCTACTGCACTCACACCATCTACCCAACAGGGTCTTTTCTCCTCAGCTCGTCTCTCTCGCTCCCATTTCACTTACTCATTTCCTCTCACCGCAGGCAGCCCAAAGTTCCTTCGCCTCTTCTTCTACTCAACTTCATACCAAAACTTTGATCGCCCCAAAGCCTATTTCTCAGTCAAAGCAGGCCCATACACTCTCCTTCAAGATTTCAATGCTTCCCTCAATGCTGATGTTGATAAAAACGCTAACGACATGTTGTTCAGAGAGTATTGCATCAACCTCGAAGATGGCCAGAAGCTCAATATAACCTTCATTCCAAGCACCACAGATTCGTACGCTTTCATCAATGGAATCGAGATTGTTTCAGTGCCCTCTTATCTCTACTACACCAATCCTAAAGTCGACAACACTGGATTGCCGCAACTTGTTGGCCACATGACCCAATATACCATTGAAAGCAACTCTGCTCTCGAGACGAAGTACCGTTTAAACGTTGGAGGAGCAACAATACCCTCCTCACGGGACACGGGTATGCTCAGGACCTGGGATGCCGATGACGACTACCTAAAATCCGAAAGTGGACCATCTGTTGATTATAAGAATAACACTAAGCTCAGCTTCATTAAGACTCCTAACTACACGGCACCGGACGAAGTGTACCGATCCTTAAGGAATATGGGACCGGATCCTTCTATGAACATGAGGTTCAACCTCACATGGCTGCTTCCTATTTATTCTGGATTCACCTACTTGCTAAGGTTACACTTCTGCCAGCTTGACCCGCAAATTGACGAGGCTGGTGAGCAGATGTTCTACATCTTCATTCAGGATCAGTTGGCTACCGATTGGGCAGACGTTCTCCTGTGGAGCGACAACCAGAAGGGCTACATCGACGACGGTTCAACACCTGTCGCAGTCAAAAGGCTCAAACCGGGTTCTGAGCAAGGTGTGAAGGAGTTCATGAACGAGATCGAAATGCTTTCTCAACTTCGTCATCTCCATCTTGTTTCCCTTATCGGTTACTGTTACGAGAGTAACGAAATGATACTCGTTTACGATTTCATGGATCGCGGAACCCTCCGTGACCATCTCTACGGCACCGATAACCCTTCTCTGTCATGGAGGCAAAGGCTCCAGATCTGCGTAGGTGCTGCACGAGGACTGCATTATCTTCATACAGGTGCGAAGCACATGATCATTCACCGTGACGTGAAGAGCACCAACATCTTATTGGATGAAAATTGGGTGGCGAAGGTCTCGGACTTCGGGTTATCCCGAATTGGGCCCACAGGTTCTTCAATGACCCATGTGAGCACTCAGGTGAAAGGCAGTGTTGGTTACTTAGATCCGGAGTATTACAAACGACAGCGTTTGACTGAGAAGTCTGATGTGTACTCGTTTGGGGTGGTGCTGTTGGAGGTATTGTCTGGGAGGCAGCCTTTGCTGCGTATGGTGGAGAAGCAACAGATGTCACTGGTTCATTGGGCAAAGCATCTATATCACAATGGCTCTCTGGGTGAGATTGTGGATCCAGCACTTATAGGCCAGATAGCATCCGAGTGTTTGCGCAAGTTTGGAGAGGTTGCCTTGAGTTGTTTGCTTGAGGATGGGACTCAGCGACCTTCCATGAACGACATCATTGGGATGCTGGAGTTGGTTCTGCAGCTTCAGAATAGTGCTGTTAATGGAGTGACAGAGAGTCGAGGGGATTATGAAGATAGTGAGGACATGTTTAGCTGTAGCCATAGTAGTGTACATGTTCTGGATAATAGTAATAGCACTGGATTGAACACCACAAGCAATGATAGCCATGGGAGTAAGGAATCTGACAGGTTGATCCCCGAGAACGTTTTCTCTGAGATTAAGGATCCAAAGGACGATGAGGTTAGTATTCAAGTTCAGATTGAGTTCGGTGTCTAA 2130 0.47 MDTSCTRIDLGTILLLLLLLCLPFPSIADVIYRPPDLFSVNCGSPNNFSAPDGRNWTGDMRFLSESHDSVAATALTPSTQQGLFSSARLSRSHFTYSFPLTAGSPKFLRLFFYSTSYQNFDRPKAYFSVKAGPYTLLQDFNASLNADVDKNANDMLFREYCINLEDGQKLNITFIPSTTDSYAFINGIEIVSVPSYLYYTNPKVDNTGLPQLVGHMTQYTIESNSALETKYRLNVGGATIPSSRDTGMLRTWDADDDYLKSESGPSVDYKNNTKLSFIKTPNYTAPDEVYRSLRNMGPDPSMNMRFNLTWLLPIYSGFTYLLRLHFCQLDPQIDEAGEQMFYIFIQDQLATDWADVLLWSDNQKGYIDDGSTPVAVKRLKPGSEQGVKEFMNEIEMLSQLRHLHLVSLIGYCYESNEMILVYDFMDRGTLRDHLYGTDNPSLSWRQRLQICVGAARGLHYLHTGAKHMIIHRDVKSTNILLDENWVAKVSDFGLSRIGPTGSSMTHVSTQVKGSVGYLDPEYYKRQRLTEKSDVYSFGVVLLEVLSGRQPLLRMVEKQQMSLVHWAKHLYHNGSLGEIVDPALIGQIASECLRKFGEVALSCLLEDGTQRPSMNDIIGMLELVLQLQNSAVNGVTESRGDYEDSEDMFSCSHSSVHVLDNSNSTGLNTTSNDSHGSKESDRLIPENVFSEIKDPKDDEVSIQVQIEFGV 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0346 709 SMART serkin_6 343 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0346 709 SUPERFAMILY Protein kinase-like (PK-like) 367 622 IPR011009 -
Ssu3g0346 709 PANTHER OS07G0166700 PROTEIN 364 666 IPR045272 GO:0004714|GO:0006468
Ssu3g0346 709 Gene3D Phosphorylase Kinase; domain 1 362 425 - -
Ssu3g0346 709 ProSiteProfiles Protein kinase domain profile. 342 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0346 709 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 30 361 - -
Ssu3g0346 709 MobiDBLite consensus disorder prediction 659 681 - -
Ssu3g0346 709 CDD STKc_IRAK 364 621 - -
Ssu3g0346 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Ssu3g0346 709 Gene3D - 37 193 - -
Ssu3g0346 709 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 364 666 - -
Ssu3g0346 709 MobiDBLite consensus disorder prediction 659 673 - -
Ssu3g0346 709 Gene3D Transferase(Phosphotransferase) domain 1 426 645 - -
Ssu3g0346 709 PANTHER OS07G0166700 PROTEIN 30 361 IPR045272 GO:0004714|GO:0006468
Ssu3g0346 709 Pfam Protein tyrosine and serine/threonine kinase 368 618 IPR001245 GO:0004672|GO:0006468
Ssu3g0346 709 Pfam Malectin-like domain 40 351 IPR024788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0346 Ssu-Chr3 7018459 7021080 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0346 364 695 Receptor kinase-like Gene Family AT3G51550 58.017 1.44e-123 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Ssu3g0346 Malectin_like 3.3e-32 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0346 - - gmx:100814046 566.614