Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0345 ATGTGCTGCTTCAATTACAGCTTATCGATGCACCCAACTGGCACTCGAATTGCTTTAGGCGCCATCCTCCTCTTGCTTTTGTGCCTCCCTTACCTTTCCACAGCAGATCATATTTATCGTCCCCATGACCACTTCAGCATCAACTGTGGCTCATCCAACAACTTGTTCACGCCCGATCGGAATTGGACTGGAGACACGAAATTCCTCTCAGAAAGAGGGGACTCAGTTCTTGCTTCTGCACTCACGCCATCTACCATACTGGGTCCTTACACCTCAGCTCGCCTCTCTCACTCCCATTTCACATACTCATTCCCCGTCACCTCAGGCCCAATGTTTCTTCGCCTCTTCTTCTACTCAACTTCATACCAAAACTTTGATCGCTCCAAAGCCTATTTCTCAGTCAAAGCAGGTCCATACACCCTCCTTCAAGATTTCAATACTTCCCTCAATGCTGATGCTGACGACGACCCTGGTCACCCCGACATCTTGTTCAGAGAGTATTGCATCAACGTCCTCGAAGATGGTCAGAAGCTCAACATAACCTTCATTCCAAACACCACAGATTCTTACGCTTTCATCAATGGAATCGAGATTGTTTCCATGCCCCCTTATCTCTTCTACACCAATCCTGACGTCGAGAACACTGGACCTCAAGCTGTTGGCACCACAATCCAATATCAAATTGAAAACAACTCAGCTCTGGAGACAAAGTACCGGCTAAGAGTGGGAGGAGCAACAATCCCCTCCTCTAAGGACACGGGTATGCTCAGGACCTGGGATGCCGATAACAAATATGTAACTACTCAAAGTGAAGTATCTGTTGATTATGGGTCTGGAATTAAGCTGAATTTCACTCAGCAGACTCCTAACTACACGGCACCAGACCAAGTGTACCGAACCTCAAGGAGCATGGGAAGGACTGGCTCTATCAACATGGGGTTCAACCTCACTTGGCAGCTTCCCGTTGATTCTGGCTTCACCTACATGCTAAGGTTGCACTTTTGCGAGCTAAACCCGCGTGTTTCGAAGGCTAGTCTCCTGAGTTTCTACATCTTCATAGCGGATCAGTTGGCTACCGATAGGGCTGACGTTCTCTTGTGGACCGATAATCGGATGGGCGGGGGAGGCTTCGGCCACGTGTACAAAGGCTACATCGACAACTATTCAACACCTGTCGCAATCAAAAGACTCAAACCTGGTTCTCGGCAAGGTGTGCACGAGTTCGTGAACGAGATCGAAATGCTTTCTCAACTTCGCCATGTCCATCTTGTTTCCCTCATCGGTTACTGCTACGAGAGCAACGAGATGTTACTCGTTTACGAATTCATGGATCACGGTACCCTCGGTGACCATCTCTACGACACTGATAACCCGTCTCTGTCGTGGAAGCAAAGGCTTCAGATCTGCATTGGTGTTGCGCGAGGATTGCATTATCTGCATACAGGTGCGAAGCACGTGATCATTCACCGTGACGTGAAGAGCACCAATATCTTATTGGATGAAAAATGGGTGGCCAAGGTTTCGGACTTCGGGTTATCCAGAATTGGGCCCACGGGTATTTCGACGACCCATGTGAACACTCAGGTGAAAGGTAGCATTGGATATTTAGACCCGGAGTATTACAAACGACAGCGTTTGACCGAGAAGTCGGACGTGTACTCGTTTGGGGTGGTGCTGTTGGAGGTGTTATCTGGGAGGCAGCCTTTGCTCCACTGGGAGGAGAAGCAAAAGACGTCACTTGTTAATTGGGCAAAGCGTTGCTGTGAGAAGGGAACTCTGAGAGAGATTGTGGATCCAGAAATGAAGGGTCAGATAGCACCTCAGTGTTCGCGCAAATTTGGTGAGGTTGCCCTGAGCTGTTTGCTTGAGGATGGGACTCAGCGGCCTTCCATGAACGACGTCGTTGGGATGCTGGAGTTTGTTCTACAGCTTCAGGATAGTGCTGTTAATGGAGTGATGGAGATTGGCGGCGATTATGAAGACAGTGAGGACATGTTTAGCAATAGCCAAAGTAGTGTACATGTTTCGGATTATGGTAATAGCACTGGATTGAACACTACAAGCAATGGAGATCGTAGCTATGGGAGTACGGAATCTGACAGGTTAATCATGATGAATGTTTTCTCTGAGATTAAGGATCCAAAGGGACGATAA 2154 0.4819 MCCFNYSLSMHPTGTRIALGAILLLLLCLPYLSTADHIYRPHDHFSINCGSSNNLFTPDRNWTGDTKFLSERGDSVLASALTPSTILGPYTSARLSHSHFTYSFPVTSGPMFLRLFFYSTSYQNFDRSKAYFSVKAGPYTLLQDFNTSLNADADDDPGHPDILFREYCINVLEDGQKLNITFIPNTTDSYAFINGIEIVSMPPYLFYTNPDVENTGPQAVGTTIQYQIENNSALETKYRLRVGGATIPSSKDTGMLRTWDADNKYVTTQSEVSVDYGSGIKLNFTQQTPNYTAPDQVYRTSRSMGRTGSINMGFNLTWQLPVDSGFTYMLRLHFCELNPRVSKASLLSFYIFIADQLATDRADVLLWTDNRMGGGGFGHVYKGYIDNYSTPVAIKRLKPGSRQGVHEFVNEIEMLSQLRHVHLVSLIGYCYESNEMLLVYEFMDHGTLGDHLYDTDNPSLSWKQRLQICIGVARGLHYLHTGAKHVIIHRDVKSTNILLDEKWVAKVSDFGLSRIGPTGISTTHVNTQVKGSIGYLDPEYYKRQRLTEKSDVYSFGVVLLEVLSGRQPLLHWEEKQKTSLVNWAKRCCEKGTLREIVDPEMKGQIAPQCSRKFGEVALSCLLEDGTQRPSMNDVVGMLEFVLQLQDSAVNGVMEIGGDYEDSEDMFSNSQSSVHVSDYGNSTGLNTTSNGDRSYGSTESDRLIMMNVFSEIKDPKGR 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0345 717 SUPERFAMILY Protein kinase-like (PK-like) 368 641 IPR011009 -
Ssu3g0345 717 SMART serkin_6 366 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0345 717 Pfam Protein tyrosine and serine/threonine kinase 369 637 IPR001245 GO:0004672|GO:0006468
Ssu3g0345 717 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 37 371 - -
Ssu3g0345 717 PANTHER OS07G0166700 PROTEIN 372 684 IPR045272 GO:0004714|GO:0006468
Ssu3g0345 717 ProSiteProfiles Protein kinase domain profile. 366 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0345 717 Gene3D Transferase(Phosphotransferase) domain 1 444 655 - -
Ssu3g0345 717 Gene3D - 44 201 - -
Ssu3g0345 717 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 372 684 - -
Ssu3g0345 717 ProSitePatterns Serine/Threonine protein kinases active-site signature. 487 499 IPR008271 GO:0004672|GO:0006468
Ssu3g0345 717 Gene3D Phosphorylase Kinase; domain 1 372 443 - -
Ssu3g0345 717 Pfam Malectin-like domain 47 360 IPR024788 -
Ssu3g0345 717 PANTHER OS07G0166700 PROTEIN 37 371 IPR045272 GO:0004714|GO:0006468
Ssu3g0345 717 CDD STKc_IRAK 372 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0345 Ssu-Chr3 6993045 6995645 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0345 372 717 Receptor kinase-like Gene Family AT3G51550 59.664 2.03e-132 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Ssu3g0345 Malectin_like 4.1e-33 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0345 - - gmx:116423798 584.334