LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu3g0344	ATGGACACATCTTGCACACGAATTGATTTAGGAAccatcctcctcctcctcctgtTGTTGTGCCTCCCTTTCCCTTCCATAGCAGATGTTATTTATCGTCCCCCTGACCTTTTCAGCATCAACTGTGGCTCACCCAACAACTTTTCAGCGCCCGATGGTCGGAATTGGACTGGAGACATGAGATTCCTCTCAGAAAGCCACGACTCAGTTGCTGCTACTGCACTCACACCATCTACCCAACAGGGTCTTTTCTCCTCAGCTCGTCTCTCTCGCTCCCAATTCACTTACTCATTTCCTCTCACCGCAGGCAGCCCAAAGTTCCTTCGCCTCTTCTTCTACTCAACTTCATACCAAAACTTTGATCGCCCCAAAGCCTATTTCTCAGTCAAAGCAGGCCCATACACTCTCCTTCAAGATTTCAATGCTTCCCTCAATGCTGATGTTGATAAAAACGCTAACGACATGTTGTTAAGAGAGTATTGCATCAACCTCGAAGATGGCCAGAAGCTCAATATAACCTTCATTCCAAGCACCACAGATTCTTACGCTTTCATCAATGGAATCGAGATTGTTTCAGTGCCCTCTTATCTCTACTACACCAATCCTAAAGTCGACAACACTGGATTGCCGCAACTTGTTGGCCACATGACCCAATATACCATTGAAAGCAACTCTGCTCTCGAGACGAAGTACCGTTTAAACGTTGGAGGAGCAACAATACCCTCCTCACGGGACACGGGTATGCTCAGGACCTGGGATGCCGATGACGACTACCTAAAATCCGAAAGTGGACCATCTGTTGATTATAAGAATAACACTAAGCTCAGCTTCATTAAGACTCCTAACTACACGGCACCGGACGAAGTGTACCGATCCTTAAGGAATATGGGACCGGATCCTTCTATGAACATGAGGTTCAACCTCACATGGCTGCTTCCTATTTATTCTGGATTCACCTACTTGCTAAGGTTACACTTCTGCCAGCTTGACCCGCAAATTGACGAGGCTGGTGAGCAGATGTTCTACATCTTCATTCAGGATCAGTTGGCTACCGATTGGGCAGACGTTCTCCTGTGGAGCGACAACCAGAAGGGTGTACCGGTGGTTAAAGACTACGAAGTTTCCATCCCAGGGAATCGGAAAAAGGTACATCTTTCACTGAAAATGCATCCTCACCCTAGAAGCTGGATCAAGGACGCACAACTAAACGCAATTGAACTCTTCAAAATCAGCGACTCAGGTAGTCTCGCTGAACCGAACTCAGACCCTCCTCCACAAACCCAGGAGGTTCCCCATCAAAGCTCAAACAAAAAAAGCAGCGGCAGCACAAGAACCCTTGCCGCCGTCGCAGGTACAGTTTCCGGTGTTGTTTTGCTTTCCCTTATTGTCGCTTTCTTCCTCATCAAACGCAAGAAGAACGTCGCCGTCGACAATCAAAAAGATGGAACTTCTCACGGCGGTGGCTCAACATGGCTACCAACCAACCTCTGCCGTCACTTCTCAATCGCAGAACTCAAAGCCGCCACCAACAACTTCGACGAACTCTTCGTCGTTGGAGTGGGAGGCTTCGGCAACGTGTACAAAGGCTACATCGACGACGGTTCAACACCTGTCGCAGTCAAAAGGCTCAAACCGGGTTCTCAGCAAGGTGTGCAGGAGTTCATGAACGAGATCGAAATGCTTTCTCAACTTCGTCATCTCCATCTTGTTTCCCTCATCGGTTACTGTTACGAGAGCAACGAGATGATACTCGTTTACGATTTCATGGATCGCGGAACCCTCCGTGACCATCTCTACGGCACCGATAACCCTTCTCTGTCATGGAAGCAAAGGCTGCAGATCTGCATAGGTGCTGCACGAGGACTGCATTATCTTCATACAGGTCTCGGACTTCGGGTTATCCCGAATTGGGCCCACGGGTTCTTCAATGACCGTGTGAGCACTCAGGTGAAAGGCAGTGTTGGATATTTAGACCCGGAGTATTACAAACGACAGCGTTTGACGGAGAAGTCTGACTTGTACTCATTTGGGGTGGTGCTGTTGGAGGTATTGTCTGGGAGGCAGCCTTTGCTCCATATGGTGGAGAGGCAACAGATGTCACTGGTTCATTGGGCAAAGCATCTCTATCACGAGGGCTCTCTGGGTGAGATAGTGGATCCAGCACTTATAGGCCAGCTAGCACCCGACTGTTTGGGCAAGTTTGGAGAGGTTGCCCTGAGTTGTTTGCTTGAGGATGGAACTCAGCGACCTTCCATGAACGACGTCGTTGGGATGCTGGAGTTTGTTCTGCAGCTTCAGGATAGTGTTGTTAATGGAGTGATAGAGAGTCGTGGGGATTATGAAGATAGTGAGAACATGTTTAGCTGTAGCCATAGTAGTGTACATGTTTCGGATTATAGTAATAGCACTGGATTGAACACTACAAGCAATGATAGCTATGGGGGTAAGGAATCTGACAGAGGCGACGACAATAGTGATGGcggtggtgacgacaacagtgttggtggtggtggcagcgatGATGGTGATGGTAGTAAAGGTAGCggcaatggtggtggcggtTGTGGTAATGGTAGTGAAGGTGGCAAGGACAATGAGGGTAGTGGTGGCACCGACGACAATGGTAACGATGGCAGTGACGGTGGTGGCAATAGTAATGATGATGGTGggctatttttgtcttttgaatattttgtacttgggacaaaaagttgtcttatagtttattga	2730	0.4586	MDTSCTRIDLGTILLLLLLLCLPFPSIADVIYRPPDLFSINCGSPNNFSAPDGRNWTGDMRFLSESHDSVAATALTPSTQQGLFSSARLSRSQFTYSFPLTAGSPKFLRLFFYSTSYQNFDRPKAYFSVKAGPYTLLQDFNASLNADVDKNANDMLLREYCINLEDGQKLNITFIPSTTDSYAFINGIEIVSVPSYLYYTNPKVDNTGLPQLVGHMTQYTIESNSALETKYRLNVGGATIPSSRDTGMLRTWDADDDYLKSESGPSVDYKNNTKLSFIKTPNYTAPDEVYRSLRNMGPDPSMNMRFNLTWLLPIYSGFTYLLRLHFCQLDPQIDEAGEQMFYIFIQDQLATDWADVLLWSDNQKGVPVVKDYEVSIPGNRKKVHLSLKMHPHPRSWIKDAQLNAIELFKISDSGSLAEPNSDPPPQTQEVPHQSSNKKSSGSTRTLAAVAGTVSGVVLLSLIVAFFLIKRKKNVAVDNQKDGTSHGGGSTWLPTNLCRHFSIAELKAATNNFDELFVVGVGGFGNVYKGYIDDGSTPVAVKRLKPGSQQGVQEFMNEIEMLSQLRHLHLVSLIGYCYESNEMILVYDFMDRGTLRDHLYGTDNPSLSWKQRLQICIGAARGLHYLHTGLGLRVIPNWAHGFFNDRVSTQVKGSVGYLDPEYYKRQRLTEKSDLYSFGVVLLEVLSGRQPLLHMVERQQMSLVHWAKHLYHEGSLGEIVDPALIGQLAPDCLGKFGEVALSCLLEDGTQRPSMNDVVGMLEFVLQLQDSVVNGVIESRGDYEDSENMFSCSHSSVHVSDYSNSTGLNTTSNDSYGGKESDRGDDNSDGGGDDNSVGGGGSDDGDGSKGSGNGGGGCGNGSEGGKDNEGSGGTDDNGNDGSDGGGNSNDDGGLFLSFEYFVLGTKSCLIVY	909

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu3g0344	909	ProSitePatterns	Protein kinases ATP-binding region signature.	518	541	IPR017441	GO:0005524
	Ssu3g0344	909	Gene3D	-	226	411	-	-
	Ssu3g0344	909	Gene3D	-	37	193	-	-
	Ssu3g0344	909	Pfam	Protein tyrosine and serine/threonine kinase	518	627	IPR001245	GO:0004672\|GO:0006468
	Ssu3g0344	909	Pfam	Protein tyrosine and serine/threonine kinase	646	705	IPR001245	GO:0004672\|GO:0006468
	Ssu3g0344	909	Gene3D	Phosphorylase Kinase; domain 1	497	588	-	-
	Ssu3g0344	909	PANTHER	CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN	643	806	-	-
	Ssu3g0344	909	PANTHER	CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN	30	629	-	-
	Ssu3g0344	909	MobiDBLite	consensus disorder prediction	869	883	-	-
	Ssu3g0344	909	Pfam	Malectin-like domain	40	410	IPR024788	-
	Ssu3g0344	909	ProSiteProfiles	Protein kinase domain profile.	512	762	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu3g0344	909	Gene3D	Transferase(Phosphotransferase) domain 1	589	638	-	-
	Ssu3g0344	909	Gene3D	Transferase(Phosphotransferase) domain 1	639	777	-	-
	Ssu3g0344	909	MobiDBLite	consensus disorder prediction	415	442	-	-
	Ssu3g0344	909	MobiDBLite	consensus disorder prediction	798	814	-	-
	Ssu3g0344	909	MobiDBLite	consensus disorder prediction	798	888	-	-
	Ssu3g0344	909	SUPERFAMILY	Protein kinase-like (PK-like)	489	762	IPR011009	-
	Ssu3g0344	909	PANTHER	OS07G0166700 PROTEIN	643	806	IPR045272	GO:0004714\|GO:0006468
	Ssu3g0344	909	PANTHER	OS07G0166700 PROTEIN	30	629	IPR045272	GO:0004714\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu3g0344	Ssu-Chr3	6887006	6890779	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu3g0344	27	844	Receptor kinase-like Gene Family	AT3G51550	42.906	0.0	617

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Ssu3g0344		Malectin_like	1.7e-37	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu3g0344	-		-	gmx:100814046	1165.21