Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0343 ATGGACACAACCGGCACACGAATTGTTTTAGGAACCATCCTCCTCTTCTTGTTGTGCCTCCCTTACTTTTCCACAACAGAGTTTATTTATCGCCCCGTTGAGCTCTTCAGCATCAACTGTGGCTCCTCTGGCAACTTGTCCACGCTCGATGGTCGGAATTGGACTGGAGACATGAAATTTCTCTCAGAAAGCCACGACTCAGTTGCAGCTACTGCAATCACACCATCTACCCAACAGGGTCCTTACACCTCAGCTCGCCCACACACCCTCCTTCAAGATTTCAATGCTTCCCTCAATGCTGATGTTGATGACGACCCTGAGGACATCTTGTTCAGAGAGTATTGCATCAACCTCGGAGATGGTGAGAGGCTCAACATAACCTTCATTCCAAGCACCACAGATTCGTATGCTTTCATCAATGGAATCGAGATTGTTTCAATGCCCTCTTATCTCTACTACACCAATCCTGCCACAGAAAGCGCCGGGTTACCGCAACTTGTTGGCCACATGACCCAATATACCATTGAAAACAACTCAGCGCTGGAGACGATGTACCGGTTAAGAGTTGGAGACGCAGAAATCCCTGCCTCTCGGGACACGGGCATGCTCAGGACCTGGGATGTCGATAACAAATATCTAACAAGTCAAAGTGTAGAATCTCTTGATATTGGCACTGGAATTAATCTGAGCTTCACAAAGACTCCTAACTACACGGCACCAGACGAAGTGTACCGATCCTTGAGGAATATGGGACGGGATGGCTCTATGAACATGAGGTTCAACCTCACGTGGCAGCTTCCCGTTGATTCTGGCTTCACCTACTTGCTAAGGTTACACTTTTGTCAGCTTGACCCGCTGGTTAACCAGACTGGTGACCTGATATTCTACATCTTCATTCAGGATAAGTTGGTTGAAGACTTCGCAGACGTCCTCTATTGGAGCGTGGGAGGCTTCGGCAACGTGTACAAAGGCTACATCGACGACGGTTCAACACCTGTCGCAATCAAAAGGCTCAAACCGGGTTCTCGGCAAGGTGTGCAAGAGTTCATGAACGAGATCGAAATGCTCTCTCAACTTCGTCATCTCAATCTTGTTTCCCTCATTGGTTACTGTTACGAAAGCAACGAGATGATACTCGTTTACGATTTCATGGATCGCGGAACCCTCCGTGACCATCTCTACGACGCCCATAACCCTTCCCTCTCGTGGAAGCAAAGGCTCCAGCTCTGCATAGGTGCTGTACGAGGACTGCATTATCTTCATACAGGTGCGAAGCACGTGATCATTCACCGTGACGTGAAGAGCACCAATATCTTACTGGATGAAAAATGGGTGGCAAAGGTTTCAGATTTCGGGTTAGCCAGAATTGGGCCCACGGGTATTTCGACGACCCATGTTAACACTGATGTGAAAGGTAGTATTGGATATTTAGACCCTGAGTATTACAAACGACATCGTTTGACGGAGAAGTCTGACGTGTACTCATTTGCGGTGGTGCTCTTGGAGGTATTATCCGGAAGGGAGCCTTTGCTCCGTTGGGAGGATAAGCAACGGATGTCACTTGTTAATTGGGCGAAGCGTTGCTATGAGAAGGGAACTCTCAGAGAGATTGTGGATCCAGAACTGAAGGGTCAGATAGCACCTCAGTGTTTGCGCAAATTTGGTGAGGTTGCACTGAGCTGTTTGCTTGAGGATGGGAATCAGCGGCCTTCCATGCACGACGTAGTTGGGATGTTGGAGTTTGTTCTGCAGCTTCAGGATAGTGTTGTTAATGGAGTGATGGAGAGTGGTGGGGATTATGAAGATAGTGCGGACGTGTTTAGCAGTAACCATAATAGTGTACATGTTTCGGATTATAGTAAGAGCACTGGATTGAGCACCACAAGCGATGGAGATCGTAGCTATGGGAGTAAGGAATCTTTCATGTTTGTCACGGAGGATGTTTTCACTGAGATTAAGGATCCAAAGGGACGATGA 1977 0.4775 MDTTGTRIVLGTILLFLLCLPYFSTTEFIYRPVELFSINCGSSGNLSTLDGRNWTGDMKFLSESHDSVAATAITPSTQQGPYTSARPHTLLQDFNASLNADVDDDPEDILFREYCINLGDGERLNITFIPSTTDSYAFINGIEIVSMPSYLYYTNPATESAGLPQLVGHMTQYTIENNSALETMYRLRVGDAEIPASRDTGMLRTWDVDNKYLTSQSVESLDIGTGINLSFTKTPNYTAPDEVYRSLRNMGRDGSMNMRFNLTWQLPVDSGFTYLLRLHFCQLDPLVNQTGDLIFYIFIQDKLVEDFADVLYWSVGGFGNVYKGYIDDGSTPVAIKRLKPGSRQGVQEFMNEIEMLSQLRHLNLVSLIGYCYESNEMILVYDFMDRGTLRDHLYDAHNPSLSWKQRLQLCIGAVRGLHYLHTGAKHVIIHRDVKSTNILLDEKWVAKVSDFGLARIGPTGISTTHVNTDVKGSIGYLDPEYYKRHRLTEKSDVYSFAVVLLEVLSGREPLLRWEDKQRMSLVNWAKRCYEKGTLREIVDPELKGQIAPQCLRKFGEVALSCLLEDGNQRPSMHDVVGMLEFVLQLQDSVVNGVMESGGDYEDSADVFSSNHNSVHVSDYSKSTGLSTTSDGDRSYGSKESFMFVTEDVFTEIKDPKGR 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0343 658 Gene3D Transferase(Phosphotransferase) domain 1 385 601 - -
Ssu3g0343 658 Pfam Malectin-like domain 89 355 IPR024788 -
Ssu3g0343 658 CDD STKc_IRAK 316 580 - -
Ssu3g0343 658 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 315 625 - -
Ssu3g0343 658 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 28 314 - -
Ssu3g0343 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672|GO:0006468
Ssu3g0343 658 Pfam Protein tyrosine and serine/threonine kinase 316 578 IPR001245 GO:0004672|GO:0006468
Ssu3g0343 658 Gene3D Phosphorylase Kinase; domain 1 314 384 - -
Ssu3g0343 658 ProSiteProfiles Protein kinase domain profile. 307 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0343 658 SMART serkin_6 307 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0343 658 SUPERFAMILY Protein kinase-like (PK-like) 295 582 IPR011009 -
Ssu3g0343 658 PANTHER OS07G0166700 PROTEIN 315 625 IPR045272 GO:0004714|GO:0006468
Ssu3g0343 658 PANTHER OS07G0166700 PROTEIN 28 314 IPR045272 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0343 Ssu-Chr3 6879550 6882135 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0343 305 658 Receptor kinase-like Gene Family AT3G51550 56.757 3.38e-130 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Ssu3g0343 PK_Tyr_Ser-Thr 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0343 - - gmx:116423798 585.874