Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0342 ATGGACACAACTGGCACACGAATTGCTTTAGGAGCCATCCTCCTCTTGCTTTTGTGCCCCCCTTACCTTTCCATAGCAGATGTTATTTATAGTCCCCTTGACCTTTACAGCATCAACTGTGGCTCATCCAACAACTTGTTCACGCCCGATCGGAATTGGACTGGAGACACGAAATTCCTCTCAGAAAGAGGGGACTCAGTTCTTGCTTCTGCACTCACGCCATCTACCATACTGGGTCCTTACACCTCAGCTCGCCTCTCTCACTCCCATTTCACATACTCATTCCCCGTCACCTCAGGCCCAATGTTTCTTCGCCTCTTCTTCTACTCAACTTCATACCAAAACTTTGATCGCTCCAAAGCCTATTTCTCAGTCAAAGTAGGTCCATACACCCTCCTTCAAGATTTCAATGCTTCCCTCAATGCTGATGCTGATGACGACCCTGGCCACCCCGACATCTTGTTCAGAGAGTATTGCATCAACGTCCTCGAAGATGGTCAGAAGCTCAACATAACCTTCATTCCAAACACCACAGATTCTTACGCTTTCATCAATGGAATCGAGATTGTTTCCATGCCCCCTTATCTCTACTACACCAATTCTGACGTCGCCAACACTGAATTGCCGCAACTTGTTGGAGTAGATGGAGCAACATATCGTATTGAAAACAACTCAGCTCTGGAGACAAAGTACCGTTTAAATGCTGGAGGACCAGCTATCCCCTCCTCAGGGGACACGGGTATGCTCAGGACCTGGGAAGCCGACGACAACTACCTAACTACTCAACATGCATCATCCTCTGAGTTTGCGCATAACACTAAGCTCAGCTTCACTATGACTCCTAACTACACGGCACCAGACCCAGTGTACCGAACCGTAAGGCATATGGGACCTAATCCCGCTAACAATAAGCGGTCCAACCTCACATGGCAGCTTCCCGTTGATTCTGGCTTCACCTACTTGCTAAGGTTACACTTTTGTGAGCTTATCCCGGATGTTGAAGAGCCTGGTGACCTGAGATTCTACATCTTCATAGAAGATCAGTTGGCTACCGATTTGGCAGACGTTCTCCTTTGGACCAAACAGAAAGTTGGTGTGGGAGGCTTCGGCAACGTGTACAAAGGCTACATCGACGACGGTTCAACACCTGTCGCAATCAAAAGGCTCAAACCGGGTTCTCAGCAAGGTGTGCAGGAATTCATGAACGAGATCGAAATGCTCTCCCAACTTCGTCATCTCCATCTTGTTTCCCTCATCGGTTACTGTTACGAGAGCAATGAGATGATACTCGTTTACGATTTCATGGATCGCGGAACCCTCTGTGACCATCTCTACGACACTGATAACCCATCTCTGTCGTGGAGCCAAAGGCTTCAGATCTGCATAGGTGCTGCGCGAGGACTGCATTATCTTCATACAGGTGCGAAGCGCATGATCATTCACCGTGATATTAAGAGCACCAATATCTTGTTGGATGAAAAATGGGTGGCCAAGGTTTCAGACTTCGGGTTATCCCGAATTGGGCCCACGGGTTCTTCAATGACCCATGTGAGCACTCAGGTGAAAGGCAGTGTTGGATATTTAGACCCGGAATATTACAAACGACAGCGTTTGACCGAAAAGTCTGACGTGTACTCGTTTGGGGTGGTGCTGTTGGAGGTATTGTCTGGGAGGCAGCCTTTGCTCCGTATGGTGGAGAAGCAACAAATGTCACTGGTTCATTGGGCAAAGCATCTCTATCACAAGGGCTCTCTCGTTGAGATTGTGGATCCAGCACTGAAGGGCCAGATAGCACCCGAGTGTCTGCGCAAGTTTGGAGAGGTTGCCCTGAGTTGTTTGCTCGAGGATGGGACTCAGCGGCCTTCCATGAACGATGTCGTTGGGATGCTGGAGTTTGTTCTGCAGCTTCAGGATAGTGCTGTTAATGGAGTGATGGTGAGTGGAGGGGATTATGAAGATAGTGAGGACATCTTTAGCAGTAGCCATAGTAGTGTACAACTTTCGGATTATAGTAAGAGCTCTGGATTAAACACTAGTTATGGGAGCAAGGAATCTGACAGGTTGATCTCCGAGAACGTTTTCTCTGAGATTAAGGATCCAAAGGGTCGATGA 2112 0.482 MDTTGTRIALGAILLLLLCPPYLSIADVIYSPLDLYSINCGSSNNLFTPDRNWTGDTKFLSERGDSVLASALTPSTILGPYTSARLSHSHFTYSFPVTSGPMFLRLFFYSTSYQNFDRSKAYFSVKVGPYTLLQDFNASLNADADDDPGHPDILFREYCINVLEDGQKLNITFIPNTTDSYAFINGIEIVSMPPYLYYTNSDVANTELPQLVGVDGATYRIENNSALETKYRLNAGGPAIPSSGDTGMLRTWEADDNYLTTQHASSSEFAHNTKLSFTMTPNYTAPDPVYRTVRHMGPNPANNKRSNLTWQLPVDSGFTYLLRLHFCELIPDVEEPGDLRFYIFIEDQLATDLADVLLWTKQKVGVGGFGNVYKGYIDDGSTPVAIKRLKPGSQQGVQEFMNEIEMLSQLRHLHLVSLIGYCYESNEMILVYDFMDRGTLCDHLYDTDNPSLSWSQRLQICIGAARGLHYLHTGAKRMIIHRDIKSTNILLDEKWVAKVSDFGLSRIGPTGSSMTHVSTQVKGSVGYLDPEYYKRQRLTEKSDVYSFGVVLLEVLSGRQPLLRMVEKQQMSLVHWAKHLYHKGSLVEIVDPALKGQIAPECLRKFGEVALSCLLEDGTQRPSMNDVVGMLEFVLQLQDSAVNGVMVSGGDYEDSEDIFSSSHSSVQLSDYSKSSGLNTSYGSKESDRLISENVFSEIKDPKGR 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0342 703 Gene3D Transferase(Phosphotransferase) domain 1 436 646 - -
Ssu3g0342 703 MobiDBLite consensus disorder prediction 663 685 - -
Ssu3g0342 703 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Ssu3g0342 703 Pfam Malectin-like domain 38 351 IPR024788 -
Ssu3g0342 703 Gene3D Phosphorylase Kinase; domain 1 364 435 - -
Ssu3g0342 703 PANTHER OS07G0166700 PROTEIN 364 676 IPR045272 GO:0004714|GO:0006468
Ssu3g0342 703 SMART serkin_6 358 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0342 703 CDD STKc_IRAK 364 631 - -
Ssu3g0342 703 SUPERFAMILY Protein kinase-like (PK-like) 361 633 IPR011009 -
Ssu3g0342 703 PANTHER OS07G0166700 PROTEIN 28 362 IPR045272 GO:0004714|GO:0006468
Ssu3g0342 703 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 364 676 - -
Ssu3g0342 703 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 28 362 - -
Ssu3g0342 703 Pfam Protein tyrosine and serine/threonine kinase 360 629 IPR001245 GO:0004672|GO:0006468
Ssu3g0342 703 Gene3D - 34 192 - -
Ssu3g0342 703 ProSiteProfiles Protein kinase domain profile. 358 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0342 703 ProSitePatterns Protein kinases ATP-binding region signature. 364 387 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0342 Ssu-Chr3 6850508 6853081 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0342 336 703 Receptor kinase-like Gene Family AT3G51550 57.179 2.17e-135 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Ssu3g0342 Malectin_like 2.6e-31 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0342 - - gmx:100305394 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0342 3 6850508 6853081 Ssu3g0342 3 6850508 6853081 ECH