Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0341 ATGACCTCCGTGAACACTGAGGTGAAAGGTAGTATTGGATATTTAGACCCGGAATATTACAAACGATATATTTTGACGGAGAAGTCTGATGTGTACTCGTTTGGGGTGGTGCTCTTGGAGGTATTATCTGGGAGGCAGCCTTTGCTCCGTTgggaggagaagaaaaagatgtCACTTGTTAATTGGGCAAAGCATTGCTATGAGAAGGGAACTCTGAGAAAGATTGTGGATACAGAACTGAAGGGGCAGATAGCACCTGATTGTTTACACAAATTTGTGTGTCGCGGATTCCGCGACGGTGAAAGAGACGGAGTCGCCTTGGGAATAGAGGATGTGAGGCGCGTGGGGCTTCGGGGGGAGCGCGATGTTCGCGGCGAAGGGGAAGAAGTGTTGGAGAGTGAGCGAAAGAGAGTGTTTCAGAGTGAGAAGCGCGGTTTGGAGGAAGTGGTGTGTGGAGTGAGGGAAGTCGTAGAAGAAGATTCGTTTCACCGGGGCGCAGTATAG 504 0.4802 MTSVNTEVKGSIGYLDPEYYKRYILTEKSDVYSFGVVLLEVLSGRQPLLRWEEKKKMSLVNWAKHCYEKGTLRKIVDTELKGQIAPDCLHKFVCRGFRDGERDGVALGIEDVRRVGLRGERDVRGEGEEVLESERKRVFQSEKRGLEEVVCGVREVVEEDSFHRGAV 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0341 167 ProSiteProfiles Protein kinase domain profile. 1 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0341 167 SUPERFAMILY Protein kinase-like (PK-like) 4 95 IPR011009 -
Ssu3g0341 167 Pfam Protein tyrosine and serine/threonine kinase 5 62 IPR001245 GO:0004672|GO:0006468
Ssu3g0341 167 Gene3D Transferase(Phosphotransferase) domain 1 1 98 - -
Ssu3g0341 167 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 2 93 - -
Ssu3g0341 167 PANTHER OS07G0166700 PROTEIN 2 93 IPR045272 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0341 Ssu-Chr3 6739404 6745444 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0341 2 92 Receptor kinase-like Gene Family AT3G51550 59.341 3.72e-30 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Ssu3g0341 PK_Tyr_Ser-Thr 1.1e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0341 - - gmx:100779523 167.933