Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0339 ATGGACACAACCGGCACACGAATTGTTTTAGGAACCATCCTCCTCTTCTTGTTGTGCCTCCCTTACTTTTCCACAACAGAGTTTATTTATCGCCCCGTTGAGCTCTTCAGCATCAACTGTGGCTCCTCTGGCAACTTGTCCACGCTCGATGGTCGGAATTGGACTGGAGACATGAAATTTCTCTCAGAAAGCCACGACTCAGTTGCAGCTACTGCAATCACACCATCTACCCAACAGGGTCCTTACACCTCAGCTCGTCTCTCTCGCTCCCAATTCACCTACTCATTTCCTGTCACCACGGGCCCAAAATTCCTTCGCCTCTTCTTCTACTCAACTTCATACCAAAACTTTGATCGCCCCAAAGCCTATTTCTCAGTCAAAGCAGGCTCGTACACCCTCCTTAAAAATTTCAATGCTTCCCTCAATGCTGATGCTGATGACGACCCTGGCCACCGAGACACGTTGTTCAGAGAGTATTGCATCAACGTCCTCGAAGATGGTGAGAGGCTCAACATAACCTTCATTCCAAGCACCACAGATTCGTACGCTTTCATCAATGGAATCGAGATTGTTTCTATGCCCCCTTATCTCTACTACACCAATTCTAACATTGACAGCGATGAATTGCCGCAACTTGTTGGAGGAGCAACATATCTTATCAAAAGCAACTCGGCTCTGGAGACGAAGTACCGGTTAAGAGGTGGAGAAGCAGATATACCCCCCTCAGGGGACACGGGTATGCTTAGGACCTGGGAAGCCGATGGCAAATATGTAACTAGTCAAAGTGTGCTATCTTCTGATTTTCAGAATAGAACTAAGCTGAGCTTCACAAAGACTCCTAACTACACGGCACCAGACAAATTGTACCGATCCTTAAGGGATATGGGAAGGAATGCCTCTACCAACATGGGGTTCAACCTCACATGGCGGATGCCTGTTGATTCTGGCTTCTTCTACTTGCTAAGGTTACACTTTTGCCAGCTTAACCCGCTGGTTAACCAGACTGGTGACCTGATCTTCTACATCTTCATTCAGGATCAGTTGGTTGAAGACATGGCAGACGTTCTCTCTTGGAGCAATAAACAGAGGGGCGTACCAGTGGTTAGAGAAATTGGGCCCACGGGTATTTCGACGACCCATGTTAACACTGATGTGAAAGGTAGTATTGGATATTTAGACCCTGAGTATTACAAACGACATCGTTTGACGGAGAAGTCTGACGTGTACTCATTTGCGGTGGTGCTCTTGGAGGTATTATCCGGAAGGGAGCCTTTGCTCCGTTGGGAGGATAAGCAACGGATGTCACTTGTTAATTGGGCGAAGCGTTGCTATGAGAAGGGAACTCTCAGAGAGATTGTGGATCCAGAACTGAAGGGTCAGATAGCACCTCAGTGTTTGCGCAAATTTGGTGAGGTTTTACTGAGCTGTTTGCTTGAGGATGGGAATCAGCGGCCTTCCATGCACGACGATACCGGTCGAGGAGATTCGGCAACCAATCATTGGCTCAAAAAGTCTACAAAAGGCCAAAGGTTGGCAACGTTGTTGCTGGTGTTAACGTTTCTTGGGCTGCAAATCGGCAGGGGTGTTATTGGGCTGAGTTAA 1602 0.4757 MDTTGTRIVLGTILLFLLCLPYFSTTEFIYRPVELFSINCGSSGNLSTLDGRNWTGDMKFLSESHDSVAATAITPSTQQGPYTSARLSRSQFTYSFPVTTGPKFLRLFFYSTSYQNFDRPKAYFSVKAGSYTLLKNFNASLNADADDDPGHRDTLFREYCINVLEDGERLNITFIPSTTDSYAFINGIEIVSMPPYLYYTNSNIDSDELPQLVGGATYLIKSNSALETKYRLRGGEADIPPSGDTGMLRTWEADGKYVTSQSVLSSDFQNRTKLSFTKTPNYTAPDKLYRSLRDMGRNASTNMGFNLTWRMPVDSGFFYLLRLHFCQLNPLVNQTGDLIFYIFIQDQLVEDMADVLSWSNKQRGVPVVREIGPTGISTTHVNTDVKGSIGYLDPEYYKRHRLTEKSDVYSFAVVLLEVLSGREPLLRWEDKQRMSLVNWAKRCYEKGTLREIVDPELKGQIAPQCLRKFGEVLLSCLLEDGNQRPSMHDDTGRGDSATNHWLKKSTKGQRLATLLLVLTFLGLQIGRGVIGLS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0339 533 Gene3D Transferase(Phosphotransferase) domain 1 364 507 - -
Ssu3g0339 533 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 370 494 - -
Ssu3g0339 533 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 28 370 - -
Ssu3g0339 533 SUPERFAMILY Protein kinase-like (PK-like) 378 489 IPR011009 -
Ssu3g0339 533 Pfam Malectin-like domain 38 365 IPR024788 -
Ssu3g0339 533 Gene3D - 34 193 - -
Ssu3g0339 533 PANTHER OS07G0166700 PROTEIN 28 370 IPR045272 GO:0004714|GO:0006468
Ssu3g0339 533 PANTHER OS07G0166700 PROTEIN 370 494 IPR045272 GO:0004714|GO:0006468
Ssu3g0339 533 Pfam Protein tyrosine and serine/threonine kinase 379 488 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0339 Ssu-Chr3 6705452 6712930 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0339 371 489 Receptor kinase-like Gene Family AT5G39000 48.739 5.31e-30 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Ssu3g0339 Malectin_like 5.6e-32 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0339 - - gmx:100814046 530.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0339 3 6705452 6712930 Ssu3g0339 3 6705452 6712930 ECH