Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0338 ATGACCTCCGTGAACACTGAGGTGAAAGGTAGTATTGGATATTTAGACCCGGAATATTACAAACGATATATTTTGACAGAGAAGTCTGATGTGTACTCGTTTGGGGTGGTGCCCTTGGAGGTATTATCTGGGAGGCAGCCTTTGCTCCGTTgggaggagaagaaaaagatgtCACTTGTTAATTGGGCAAAGCATTGCTATGAGAAGGGAACTCTGAGAAAGATTGTGGATACAGAACTGAAGGGGCAGATAGCACCTGATTGTTTACACAAATTTGGTGAGGTTGCCCTGAGGAGTTTGCTTGAGGATGGGACTCGGCGGCCTTCCATGAACGACGTCGTTGGGGTGTTGGACTCTTCGTGGTTGGCATGGGAGGCTTTGGCAATGTGTACAAAGGCTACATCGACAACGGTTCAACTACTGTCGCAATCAAAAGGCTCAAACCGGGTTCTCGGCAAGAAAAATGCGGttgatgcggccgcaattgcggtcatgatgcggttgcggtga 510 0.4196 MTSVNTEVKGSIGYLDPEYYKRYILTEKSDVYSFGVVPLEVLSGRQPLLRWEEKKKMSLVNWAKHCYEKGTLRKIVDTELKGQIAPDCLHKFGEVALRSLLEDGTRRPSMNDVVGVLDSSWLAWEALAMCTKATSTTVQLLSQSKGSNRVLGKKNAVDAAAIAVMMRLR 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0338 169 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 2 119 - -
Ssu3g0338 169 PANTHER OS07G0166700 PROTEIN 2 119 IPR045272 GO:0004714|GO:0006468
Ssu3g0338 169 SUPERFAMILY Protein kinase-like (PK-like) 4 120 IPR011009 -
Ssu3g0338 169 Pfam Protein tyrosine and serine/threonine kinase 5 114 IPR001245 GO:0004672|GO:0006468
Ssu3g0338 169 Gene3D Transferase(Phosphotransferase) domain 1 1 132 - -
Ssu3g0338 169 ProSiteProfiles Protein kinase domain profile. 1 122 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0338 Ssu-Chr3 6653095 6658660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0338 2 114 Receptor kinase-like Gene Family AT3G51550 55.752 9.86e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Ssu3g0338 PK_Tyr_Ser-Thr 2.2e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0338 - - gmx:100779523 202.601